SGN Marker C2_At5g11560

SGN-M8654
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeMultiple299995 (SGN)
123534 (CGN)
---
Lycopersicon CombinedSingleSGN-U223867---
Solanum tuberosumSingleSGN-U249318---
ArabidopsisSingleAt5g11560 on TAIR---
Mapped locations  
Map: Tomato-EXPEN 2000   
Map version
52 (location: 38778)
Chromosome
9
Position
26.00 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39920
Forward primer (5'-3')
ATTACGCAAATTATTCCTCTGCCA
Accessions and product sizes
Solanum lycopersicum TA209
250
Solanum pennellii TA56
250
Approximate temperature
55°C
Reverse primer (5'-3')
AGCGTTAACTTTAGCTTGCGTGTGAAC
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
175
Solanum lycopersicum TA209
250
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 27111)
Chromosome
5
Position
3.71 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Universal primers for Asterid species 
No additional PCR data found.
Genomic location of C2_At5g11560  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8654 marker 8654
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