Sol Genomics Network

SGN Marker C2_At5g12370

SGN-M8665
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	310593 (SGN) 131667 (CGN)	-	-	-
Capsicum annuum	Single	SGN-U199604	-	-	-
Lycopersicon Combined	Single	SGN-U223472	-	-	-
Solanum tuberosum	Single	SGN-U266621	-	-	-
Arabidopsis	Single	At5g12370 on TAIR	-	-	-

Mapped locations

Map: Tomato-EXPEN 2000
Map version 52 (location: 38781)
Chromosome 3
Position 72.50 cM
Confidence I(LOD2)
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39923

Forward primer (5'-3')

AGGGTTGCTGCTGCAGCTGCTTC

Accessions and product sizes

Solanum pennellii TA56

1400

Solanum lycopersicum TA209

450

Approximate temperature

55°C

Reverse primer (5'-3')

TCACCAGCAGCAGCTGCTGCTTC

Digested band sizes (using amplicon difference)

Solanum lycopersicum TA209

450

Solanum pennellii TA56

1400

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 27123)
Chromosome 5
Position 4.01 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 11700
Forward primer (5'-3') AGGGTTGCTGCTGCAGCTGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCACCAGCAGCAGCTGCTGCTTC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 150	Approximate temperature 55°C

PCR data Exp. ID 11701
Forward primer (5'-3') AGGGTTGCTGCTGCAGCTGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCACCAGCAGCAGCTGCTGCTTC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 150	Approximate temperature 55°C

PCR data Exp. ID 11702
Forward primer (5'-3') AGGGTTGCTGCTGCAGCTGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCACCAGCAGCAGCTGCTGCTTC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 150	Approximate temperature 55°C

PCR data Exp. ID 13699
Forward primer (5'-3') AGGGTTGCTGCTGCAGCTGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCACCAGCAGCAGCTGCTGCTTC	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 200	Approximate temperature 55°C

PCR data Exp. ID 13700
Forward primer (5'-3') AGGGTTGCTGCTGCAGCTGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCACCAGCAGCAGCTGCTGCTTC	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 200	Approximate temperature 55°C

PCR data Exp. ID 13701
Forward primer (5'-3') AGGGTTGCTGCTGCAGCTGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCACCAGCAGCAGCTGCTGCTTC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 200	Approximate temperature 55°C

PCR data Exp. ID 13702
Forward primer (5'-3') AGGGTTGCTGCTGCAGCTGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCACCAGCAGCAGCTGCTGCTTC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 200	Approximate temperature 55°C

PCR data Exp. ID 13703
Forward primer (5'-3') AGGGTTGCTGCTGCAGCTGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCACCAGCAGCAGCTGCTGCTTC	Enzymes
Accessions and product sizes Nicotiana plumbaginifolia TA3354: 200	Approximate temperature 55°C

PCR data Exp. ID 13704
Forward primer (5'-3') AGGGTTGCTGCTGCAGCTGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCACCAGCAGCAGCTGCTGCTTC	Enzymes
Accessions and product sizes Physalis TA1367: 200	Approximate temperature 55°C

PCR data Exp. ID 13705
Forward primer (5'-3') AGGGTTGCTGCTGCAGCTGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCACCAGCAGCAGCTGCTGCTTC	Enzymes
Accessions and product sizes Petunia axillaris TA3309: 200	Approximate temperature 55°C

PCR data Exp. ID 13706
Forward primer (5'-3') AGGGTTGCTGCTGCAGCTGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCACCAGCAGCAGCTGCTGCTTC	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 200	Approximate temperature 55°C

PCR data Exp. ID 13707
Forward primer (5'-3') AGGGTTGCTGCTGCAGCTGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCACCAGCAGCAGCTGCTGCTTC	Enzymes
Accessions and product sizes Petunia integrifolia TA3312: 200	Approximate temperature 55°C

PCR data Exp. ID 32653
Forward primer (5'-3') AGGGTTGCTGCTGCAGCTGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCACCAGCAGCAGCTGCTGCTTC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 200	Approximate temperature 55°C

PCR data Exp. ID 33198
Forward primer (5'-3') AGGGTTGCTGCTGCAGCTGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCACCAGCAGCAGCTGCTGCTTC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 200	Approximate temperature 55°C

PCR data Exp. ID 33199
Forward primer (5'-3') AGGGTTGCTGCTGCAGCTGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCACCAGCAGCAGCTGCTGCTTC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 200	Approximate temperature 55°C

PCR data Exp. ID 33200
Forward primer (5'-3') AGGGTTGCTGCTGCAGCTGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCACCAGCAGCAGCTGCTGCTTC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 200	Approximate temperature 55°C

PCR data Exp. ID 33201
Forward primer (5'-3') AGGGTTGCTGCTGCAGCTGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCACCAGCAGCAGCTGCTGCTTC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 200	Approximate temperature 55°C

PCR data Exp. ID 11703
Forward primer (5'-3') AGGGTTGCTGCTGCAGCTGCTTC	Digested band sizes (using HinfI) Solanum lycopersicum LA925: 150 Solanum pennellii LA716: 100	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCACCAGCAGCAGCTGCTGCTTC	Enzymes All possible enzymes for pennellii and and lycopersicum: HinfI
Accessions and product sizes Solanum lycopersicum LA925: 150 Solanum pennellii LA716: 150	Approximate temperature 55°C