SGN Marker C2_At5g20990

SGN-M8788
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle311560 (SGN)
127250 (CGN)		---
Capsicum annuumSingleSGN-U204210---
Solanum tuberosumSingleSGN-U264999---
ArabidopsisSingleAt5g20990 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 27249)
Chromosome
5
Position
7.13 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41742
Forward primer (5'-3')
AGCAGGAAATGATGCACTTGGTGTG
Accessions and product sizes
Solanum pennellii TA56
180
Solanum lycopersicum TA209
180
Approximate temperature
55°C
Reverse primer (5'-3')
TGAAATTGATTCAGTGTCCTCTACTTGC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11786
Forward primer (5'-3')
AGCAGGAAATGATGCACTTGGTGTG
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
TGAAATTGATTCAGTGTCCTCTACTTGC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 1800
 Approximate temperature
55°C
  
PCR data   Exp. ID 11787
Forward primer (5'-3')
AGCAGGAAATGATGCACTTGGTGTG
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
TGAAATTGATTCAGTGTCCTCTACTTGC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 1850
 Approximate temperature
55°C
  
PCR data   Exp. ID 11788
Forward primer (5'-3')
AGCAGGAAATGATGCACTTGGTGTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGAAATTGATTCAGTGTCCTCTACTTGC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 1800
 Approximate temperature
55°C
  
PCR data   Exp. ID 32577
Forward primer (5'-3')
AGCAGGAAATGATGCACTTGGTGTG
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
TGAAATTGATTCAGTGTCCTCTACTTGC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 1800
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U291604
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At5g20990  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8788 marker 8788
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