SGN Marker C2_At5g23060

SGN-M8808
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle300391 (SGN)
120167 (CGN)		---
Lycopersicon CombinedSingleSGN-U215796---
Solanum tuberosumSingleSGN-U245080---
ArabidopsisSingleAt5g23060 on TAIR---
Mapped locations  
Map: Pepper-COSII   
Map version
58 (location: 41524)
Chromosome
3
Position
119.20 cM
Confidence
F(LOD3)
Protocol
CAPS


Pepper-COSII

PCR data   Exp. ID 43500
Forward primer (5'-3')
ACTTAGAGCTTCTTCAGCCACCGC
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
ATGCCAGCACTCTGCATTGCCTC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Tomato-EXPEN 2000   
Map version
52 (location: 38818)
Chromosome
3
Position
102.50 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39945
Forward primer (5'-3')
ACTTAGAGCTTCTTCAGCCACCGC
Accessions and product sizes
Solanum pennellii TA56
370
Solanum lycopersicum TA209
370
Approximate temperature
55°C
Reverse primer (5'-3')
ATGCCAGCACTCTGCATTGCCTC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 27269)
Chromosome
5
Position
7.74 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Other PCR data 
PCR data   Exp. ID 11798
Forward primer (5'-3')
ACTTAGAGCTTCTTCAGCCACCGC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATGCCAGCACTCTGCATTGCCTC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 900
 Approximate temperature
55°C
  
PCR data   Exp. ID 11799
Forward primer (5'-3')
ACTTAGAGCTTCTTCAGCCACCGC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATGCCAGCACTCTGCATTGCCTC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 900
 Approximate temperature
55°C
  
PCR data   Exp. ID 11800
Forward primer (5'-3')
ACTTAGAGCTTCTTCAGCCACCGC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATGCCAGCACTCTGCATTGCCTC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 900
 Approximate temperature
55°C
  
PCR data   Exp. ID 11801
Forward primer (5'-3')
ACTTAGAGCTTCTTCAGCCACCGC
Digested band sizes (using MspI)
Solanum pennellii LA716: 900
Solanum lycopersicum LA925: 850
 Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATGCCAGCACTCTGCATTGCCTC
Enzymes
All possible enzymes for pennellii and and lycopersicum: AluI (30bp),BsoBI,BstNI,CfoI/HhaI,MspI,NciI,SmaI,SsPI,
All possible enzymes for lycopersicum and pimpinellifolium: AvaII,BslI,BsoBI,BstNI,EcoO109I,MspI,NciI,Sau96I,ScrFI,SmaI,
  
Accessions and product sizes
Solanum lycopersicum LA925: 900
Solanum pennellii LA716: 900
 Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Amplicon sequence alignment, FASTA
At5g23060F.cds.txt, plain text
Forward amplicon sequence for S. pimpinellifolium LA1589, AB1 chromatogram - [View]
Forward amplicon sequence for S. pimpinellifolium LA1589, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, plain text
Forward amplicon sequence for S. hirtum 130005 plant #3, AB1 chromatogram - [View]
Forward amplicon sequence for S. hirtum 130005 plant #3, plain text
Forward amplicon sequence for S. quitoense SE plant #1, AB1 chromatogram - [View]
Forward amplicon sequence for S. quitoense SE plant #1, plain text
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Amplicon sequence alignment, FASTA
At5g23060F.cds.txt, plain text
Forward amplicon sequence for S. pimpinellifolium LA1589, AB1 chromatogram - [View]
Forward amplicon sequence for S. pimpinellifolium LA1589, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, plain text
Forward amplicon sequence for S. hirtum 130005 plant #3, AB1 chromatogram - [View]
Forward amplicon sequence for S. hirtum 130005 plant #3, plain text
Forward amplicon sequence for S. quitoense SE plant #1, AB1 chromatogram - [View]
Forward amplicon sequence for S. quitoense SE plant #1, plain text
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At5g23060  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8808 marker 8808
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