Sol Genomics Network

SGN-M8810
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Capsicum annuum	Single	SGN-U199573	-	-	-
Lycopersicon Combined	Multiple	SGN-U216498	-	-	-
Solanum tuberosum	Single	SGN-U251304	-	-	-
Arabidopsis	Single	At5g23120 on TAIR	-	-	-

Arabidopsis COSII

PCR data Exp. ID 41752

Forward primer (5'-3')

TGAAGACACTCCTCTCTCTGAATGGG

Accessions and product sizes

Solanum lycopersicum TA209

250

Solanum pennellii TA56

250

Approximate temperature

55°C

Reverse primer (5'-3')

AGGCTATGGATCTAGGTACCCAAG

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

1.5mM

Enzymes

Other PCR data

PCR data Exp. ID 11802
Forward primer (5'-3') TGAAGACACTCCTCTCTCTGAATGGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGCTATGGATCTAGGTACCCAAG	Enzymes
Accessions and product sizes Solanum pennellii LA716: 1300	Approximate temperature 55°C

PCR data Exp. ID 11803
Forward primer (5'-3') TGAAGACACTCCTCTCTCTGAATGGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGCTATGGATCTAGGTACCCAAG	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 1300	Approximate temperature 55°C

PCR data Exp. ID 11804
Forward primer (5'-3') TGAAGACACTCCTCTCTCTGAATGGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGCTATGGATCTAGGTACCCAAG	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 1300	Approximate temperature 55°C

PCR data Exp. ID 13790
Forward primer (5'-3') TGAAGACACTCCTCTCTCTGAATGGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGCTATGGATCTAGGTACCCAAG	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 1100	Approximate temperature 55°C

PCR data Exp. ID 13791
Forward primer (5'-3') TGAAGACACTCCTCTCTCTGAATGGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGCTATGGATCTAGGTACCCAAG	Enzymes
Accessions and product sizes Solanum melongena TA2986: 1400	Approximate temperature 55°C

PCR data Exp. ID 13792
Forward primer (5'-3') TGAAGACACTCCTCTCTCTGAATGGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGCTATGGATCTAGGTACCCAAG	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 1850	Approximate temperature 55°C

PCR data Exp. ID 13793
Forward primer (5'-3') TGAAGACACTCCTCTCTCTGAATGGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGCTATGGATCTAGGTACCCAAG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: Multiple	Approximate temperature 55°C

PCR data Exp. ID 13794
Forward primer (5'-3') TGAAGACACTCCTCTCTCTGAATGGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGCTATGGATCTAGGTACCCAAG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 1100	Approximate temperature 55°C

PCR data Exp. ID 13795
Forward primer (5'-3') TGAAGACACTCCTCTCTCTGAATGGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGCTATGGATCTAGGTACCCAAG	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 1200	Approximate temperature 55°C

PCR data Exp. ID 13796
Forward primer (5'-3') TGAAGACACTCCTCTCTCTGAATGGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGCTATGGATCTAGGTACCCAAG	Enzymes
Accessions and product sizes Petunia axillaris TA3309: 1250	Approximate temperature 55°C

PCR data Exp. ID 13797
Forward primer (5'-3') TGAAGACACTCCTCTCTCTGAATGGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGCTATGGATCTAGGTACCCAAG	Enzymes
Accessions and product sizes Petunia axillaris subsp. parodii TA3310: 1100	Approximate temperature 55°C

PCR data Exp. ID 33233
Forward primer (5'-3') TGAAGACACTCCTCTCTCTGAATGGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGCTATGGATCTAGGTACCCAAG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: Multiple	Approximate temperature 55°C

PCR data Exp. ID 33234
Forward primer (5'-3') TGAAGACACTCCTCTCTCTGAATGGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGCTATGGATCTAGGTACCCAAG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 1100	Approximate temperature 55°C

PCR data Exp. ID 33235
Forward primer (5'-3') TGAAGACACTCCTCTCTCTGAATGGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGCTATGGATCTAGGTACCCAAG	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 1200	Approximate temperature 55°C