SGN Marker C2_At5g26030

SGN-M8846
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle302746 (SGN)
125062 (CGN)
---
Capsicum annuumSingleSGN-U201846---
Lycopersicon CombinedMultipleSGN-U215924---
Solanum tuberosumSingleSGN-U248535---
ArabidopsisSingleAt5g26030 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 27308)
Chromosome
5
Position
9.10 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41769
Forward primer (5'-3')
TCAACAATGATCATACCTTGGCTTACC
Accessions and product sizes
Solanum pennellii TA56
1650
Solanum lycopersicum TA209
1650
Approximate temperature
55°C
Reverse primer (5'-3')
ACCATTGGACAGGACCAACTCGG
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
750+850
Solanum lycopersicum TA209
750+900
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11830
Forward primer (5'-3')
TCAACAATGATCATACCTTGGCTTACC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ACCATTGGACAGGACCAACTCGG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 750
Approximate temperature
53°C
  
PCR data   Exp. ID 11831
Forward primer (5'-3')
TCAACAATGATCATACCTTGGCTTACC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ACCATTGGACAGGACCAACTCGG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 750
Approximate temperature
53°C
  
PCR data   Exp. ID 11832
Forward primer (5'-3')
TCAACAATGATCATACCTTGGCTTACC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ACCATTGGACAGGACCAACTCGG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 750
Approximate temperature
53°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At5g26030  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8846 marker 8846
User comments 
Please wait, checking for comments. (If comments do not show up, access them here)