SGN Marker C2_At5g39600

SGN-M8902
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle303837 (SGN)
121381 (CGN)
---
Capsicum annuumSingleSGN-U204820---
Solanum tuberosumSingleSGN-U248634---
ArabidopsisSingleAt5g39600 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 27367)
Chromosome
5
Position
15.87 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]

Genomic location of C2_At5g39600  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8902 marker 8902
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