SGN Marker C2_At5g40500

SGN-M8912
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle308178 (SGN)
125904 (CGN)
---
Lycopersicon CombinedSingleSGN-U236661---
ArabidopsisSingleAt5g40500 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 27377)
Chromosome
5
Position
16.25 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41797
Forward primer (5'-3')
ATTTCACCCCCTCCCAAGAACC
Accessions and product sizes
Solanum lycopersicum TA209
350
Solanum pennellii TA56
350
Approximate temperature
55°C
Reverse primer (5'-3')
TGAAATGGTGTAAGCTCGGCCTTC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At5g40500  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8912 marker 8912
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