SGN Marker C2_At5g45410

SGN-M8963
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle309472 (SGN)
131023 (CGN)
---
Lycopersicon CombinedMultipleSGN-U215355---
Solanum tuberosumSingleSGN-U248337---
ArabidopsisSingleAt5g45410 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 27430)
Chromosome
5
Position
18.42 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41814
Forward primer (5'-3')
ACAGACTGAGGAGACATCTGATTGCTC
Accessions and product sizes
Solanum lycopersicum TA209
250
Solanum pennellii TA56
250
Approximate temperature
55°C
Reverse primer (5'-3')
TCCATGGAAGACTTTAAATGCCATATC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11919
Forward primer (5'-3')
ACAGACTGAGGAGACATCTGATTGCTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCCATGGAAGACTTTAAATGCCATATC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 380
Approximate temperature
55°C
  
PCR data   Exp. ID 11920
Forward primer (5'-3')
ACAGACTGAGGAGACATCTGATTGCTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCCATGGAAGACTTTAAATGCCATATC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 380
Approximate temperature
55°C
  
PCR data   Exp. ID 11921
Forward primer (5'-3')
ACAGACTGAGGAGACATCTGATTGCTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCCATGGAAGACTTTAAATGCCATATC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 380
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Amplicon sequence alignment, FASTA
At5g45410F.cds.txt, plain text
Forward amplicon sequence for S. pimpinellifolium LA1589, AB1 chromatogram - [View]
Forward amplicon sequence for S. pimpinellifolium LA1589, PDF chromatogram
Forward amplicon sequence for S. pimpinellifolium LA1589, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, PDF chromatogram
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, PDF chromatogram
Forward amplicon sequence for S. pennellii TA56, plain text

Genomic location of C2_At5g45410  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8963 marker 8963
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