SGN Marker C2_At5g47570

SGN-M8982
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle302690 (SGN)
122434 (CGN)		---
Capsicum annuumSingleSGN-U197152---
Lycopersicon CombinedSingleSGN-U217113---
Solanum tuberosumSingleSGN-U245210---
ArabidopsisSingleAt5g47570 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 27449)
Chromosome
5
Position
19.31 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41826
Forward primer (5'-3')
TTGGACTGTTAGCTGTTTGGAATG
Accessions and product sizes
Solanum pennellii TA56
3000
Approximate temperature
Unknown
Reverse primer (5'-3')
AAGTTGTCATATGGATAGACCTTTGG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11944
Forward primer (5'-3')
TTGGACTGTTAGCTGTTTGGAATG
 
 
Mg+2 concentration
Unknown
Reverse primer (5'-3')
AAGTTGTCATATGGATAGACCTTTGG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 3000
 Approximate temperature
Unknown
  
Unigene blast matches for primers 
SGN-U209283
SGN-U209284
SGN-U217113
SGN-U270501
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At5g47570  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8982 marker 8982
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