SGN Marker C2_At5g54855

SGN-M9078
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle301798 (SGN)
124905 (CGN)
---
Capsicum annuumSingleSGN-U200805---
Lycopersicon CombinedSingleSGN-U219830---
Solanum tuberosumSingleSGN-U250322---
ArabidopsisSingleAt5g54855 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 27550)
Chromosome
5
Position
22.30 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41867
Forward primer (5'-3')
TTACCTAATTACCAATTTGACCCTAC
Accessions and product sizes
Approximate temperature
Unknown
Reverse primer (5'-3')
TCCCCAGTCTTCGTAATGCAAAGAAC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 12025
Forward primer (5'-3')
ATGTTTGTGGTGATTCTTCTGTTGGTC
 
 
Mg+2 concentration
Unknown
Reverse primer (5'-3')
TTCCCCAGTCTTCGTAATGCAAAG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 3000
Approximate temperature
Unknown
  
PCR data   Exp. ID 12026
Forward primer (5'-3')
ATGTTTGTGGTGATTCTTCTGTTGGTC
 
 
Mg+2 concentration
Unknown
Reverse primer (5'-3')
TTCCCCAGTCTTCGTAATGCAAAG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 3000
Approximate temperature
Unknown
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]

Genomic location of C2_At5g54855  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D9078 marker 9078
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