SGN Marker C2_At5g58240

SGN-M9118
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle304344 (SGN)
119773 (CGN)
---
Capsicum annuumSingleSGN-U202264---
Lycopersicon CombinedSingleSGN-U217846---
Solanum tuberosumMultipleSGN-U247943---
ArabidopsisSingleAt5g58240 on TAIR---
Mapped locations  
Map: Tomato-EXPEN 2000   
Map version
52 (location: 38899)
Chromosome
9
Position
50.50 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 40001
Forward primer (5'-3')
GTGCTTGTCTGCCCAAGGCGT
Accessions and product sizes
Solanum pennellii TA56
875
Solanum lycopersicum TA209
875
Approximate temperature
55°C
Reverse primer (5'-3')
GAACATGCGGAACTGTCTGTCCT
Digested band sizes (using amplicon difference)
Solanum lycopersicum TA209
875
Solanum pennellii TA56
425+450
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 27591)
Chromosome
5
Position
23.58 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]

Genomic location of C2_At5g58240  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D9118 marker 9118
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