SGN Marker C2_At5g61540

SGN-M9151
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle308201 (SGN)
129741 (CGN)		---
Capsicum annuumSingleSGN-U199994---
Lycopersicon CombinedSingleSGN-U241928---
ArabidopsisSingleAt5g61540 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 27627)
Chromosome
5
Position
24.76 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41888
Forward primer (5'-3')
TATCCATTAGTGGTCAGCACCTGGC
Accessions and product sizes
Solanum pennellii TA56
1350
Solanum lycopersicum TA209
1400
Approximate temperature
55°C
Reverse primer (5'-3')
TCATCTGGGCTCCCACCAGGTC
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
1350
Solanum lycopersicum TA209
1400
Mg+2 concentration
1.5mM
   Enzymes
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At5g61540  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D9151 marker 9151
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