SGN Marker C2_At5g61970

SGN-M9154
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle311078 (SGN)
126750 (CGN)		---
Capsicum annuumSingleSGN-U200402---
Lycopersicon CombinedMultipleSGN-U215687---
Solanum tuberosumSingleSGN-U247530---
ArabidopsisSingleAt5g61970 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 27630)
Chromosome
5
Position
24.91 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41889
Forward primer (5'-3')
ATGGTTCAGCTGCTGATTCTCTTCC
Accessions and product sizes
Solanum pennellii TA56
100
Solanum lycopersicum TA209
100
Approximate temperature
55°C
Reverse primer (5'-3')
TCCGGATGCAGCTCCTGGCTTC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 12079
Forward primer (5'-3')
ATGGTTCAGCTGCTGATTCTCTTCC
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
TCCGGATGCAGCTCCTGGCTTC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 100
 Approximate temperature
55°C
  
PCR data   Exp. ID 12080
Forward primer (5'-3')
ATGGTTCAGCTGCTGATTCTCTTCC
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
TCCGGATGCAGCTCCTGGCTTC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 100
 Approximate temperature
55°C
  
PCR data   Exp. ID 12081
Forward primer (5'-3')
ATGGTTCAGCTGCTGATTCTCTTCC
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
TCCGGATGCAGCTCCTGGCTTC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 100
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U215687
SGN-U274183
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At5g61970  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D9154 marker 9154
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