SGN Marker C2_At5g64180

SGN-M9192
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle304950 (SGN)
123245 (CGN)		---
Lycopersicon CombinedMultipleSGN-U218482---
Solanum tuberosumSingleSGN-U256733---
ArabidopsisSingleAt5g64180 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 27668)
Chromosome
5
Position
25.69 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41901
Forward primer (5'-3')
TCAGAAAGCTGCTGAACTACGTGC
Accessions and product sizes
Solanum pennellii TA56
350
Solanum lycopersicum TA209
350
Approximate temperature
55°C
Reverse primer (5'-3')
TTGGATATCTCTTCTTGCTTTGC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 12115
Forward primer (5'-3')
TCAGAAAGCTGCTGAACTACGTGC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTGGATATCTCTTCTTGCTTTGC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 350
 Approximate temperature
55°C
  
PCR data   Exp. ID 12116
Forward primer (5'-3')
TCAGAAAGCTGCTGAACTACGTGC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTGGATATCTCTTCTTGCTTTGC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 350
 Approximate temperature
55°C
  
PCR data   Exp. ID 12117
Forward primer (5'-3')
TCAGAAAGCTGCTGAACTACGTGC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTGGATATCTCTTCTTGCTTTGC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 350
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U218482
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At5g64180  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D9192 marker 9192
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