SGN Marker C2_At5g67320

SGN-M9237
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle304703 (SGN)
122608 (CGN)
---
Capsicum annuumMultipleSGN-U201536---
Lycopersicon CombinedMultipleSGN-U218464---
Solanum tuberosumSingleSGN-U253730---
ArabidopsisSingleAt5g67320 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 27713)
Chromosome
5
Position
26.88 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41911
Forward primer (5'-3')
ACAAAACCGCAATTGTATGGGATG
Accessions and product sizes
Solanum pennellii TA56
450
Solanum lycopersicum TA209
450
Approximate temperature
55°C
Reverse primer (5'-3')
ATTGTTGTTTCGCCAATCAACATC
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
180+220
Solanum lycopersicum TA209
450
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 12135
Forward primer (5'-3')
ACAAAACCGCAATTGTATGGGATG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATTGTTGTTTCGCCAATCAACATC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 200
Approximate temperature
55°C
  
PCR data   Exp. ID 12136
Forward primer (5'-3')
ACAAAACCGCAATTGTATGGGATG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATTGTTGTTTCGCCAATCAACATC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 200
Approximate temperature
55°C
  
PCR data   Exp. ID 12137
Forward primer (5'-3')
ACAAAACCGCAATTGTATGGGATG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATTGTTGTTTCGCCAATCAACATC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 200
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]

Genomic location of C2_At5g67320  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D9237 marker 9237
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