SGN Marker SSR306

SGN-M979

SynonymsNone
Locus associationsNone
SSR info 

Annealing temperatures: Low: 45 High: 50
Repeat motif: ATT   Repeat number: 7
Repeat motif:    Repeat number:
Forward primer: ACATGAGCCCAATGAACCTC
Reverse primer: AACCATTCCGCACGTACATA
Predicted size: 258
Mapped locations  
Map: Sun1642 x LA1589   
Map version
85 (location: 43793)
Chromosome
4
Position
55.50 cM
Confidence
uncalculated
Protocol
SSR


Sun1642 x LA1589

PCR data   Exp. ID 44802
Forward primer (5'-3')
ACATGAGCCCAATGAACCTC
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
AACCATTCCGCACGTACATA
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Integrated map: Yellow Stuffer X LA1589 and Sun1642 X LA1589   
Map version
79 (location: 43253)
Chromosome
4
Position
53.20 cM
Confidence
uncalculated
Protocol
SSR


Integrated map: Yellow Stuffer X LA1589 and Sun1642 X LA1589

PCR data   Exp. ID 44616
Forward primer (5'-3')
ACATGAGCCCAATGAACCTC
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
AACCATTCCGCACGTACATA
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Tomato-EXPIMP 2008   
Map version
55 (location: 40789)
Chromosome
4
Position
48.00 cM
Confidence
uncalculated
Protocol
SSR


Tomato-EXPIMP 2008

Map: Tomato-EXPEN 2000   
Map version
52 (location: 39214)
Chromosome
4
Position
56.00 cM
Confidence
I
Protocol
SSR


Tomato-EXPEN 2000
Other PCR data 
PCR data   Exp. ID 61
Forward primer (5'-3')
ACATGAGCCCAATGAACCTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AACCATTCCGCACGTACATA
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 258+258
Solanum pennellii LA716: 248+258
Approximate temperature
55°C
  
Genomic location of SSR306  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D979 marker 979
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