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EST details — SGN-E238550

Search information 
Request: 238550Match: SGN-E238550
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C16622Clone name: cLED-17-B19
cartOrder Clone
Library Name: cLEDOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: ovary
Development Stage: 5 days pre-anthesis to 5 days post-anthesis

Microarray: Alias clone SGN-C175718 is on microarray TOM1: SGN-S1-1-5.2.11.4
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C175718 [TUS-22-B4] Trace: SGN-T1377 EST: SGN-E378369 Direction: 5' Facility: Giov. Lab
Clone: SGN-C175718 [TUS-22-B4] Trace: SGN-T180884 EST: SGN-E368702 Direction: 3' Facility: INRA
Clone: SGN-C175718 [TUS-22-B4] Trace: SGN-T180885 EST: SGN-E368703 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E238550Length: 569 bp (926 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E238550 [] (trimmed) CCAAACCAAAGATTTCAAAGAAGTAAAAAAAAAAAATGGCTAGTATTCCTAGTACCATAGTTAACACTAGTTTCTTGCCAAGAAGAAGTGTTGTT
ACTAGCCTTAAATCCATACCAAATGTTGGTGAATCTCTCTTTGGTCTTAAAAGTGGTAGAAGTGGAAGGATTACTTGCATGGCTACATACAAAGT
GAAGCTTATTACACCAGAAGGACCTTTTGAATTTGATTGTCCTGATGATGTCAGCATTCTTGATCGGGCGGAGGAAACGGGGCTAGATCTTCCTT
ATTCATGTAGGGCTGGTGCTTGCTCATCTTGTGCTGGAAAGGTTACTGCTGGAAGTGTTGATCAGTCTGATAACAGTTTTCTTGATGATGACCAA
ATAGATGAAGGATTTGTGCTCACTTGTGTTGCTTATCCAAAGTCTAATGTTACCATTCAGACTCACAAGGAGGAGGACCTTGTTGGCTAACTAGT
ATTTTACTTCTTTTCTTATCAATAATTAAATTAGGTGCTATGTACCTCTTTTATATAAGTCAATGATGACTTGTACCATAATGATTTATGGAAG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E238550] SGN-U579122 Tomato 200607 Build 2 70 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T52992 [Download][View] Facility Assigned ID: TOVCO10TH
Submitter: Koni Sequencing Facility: TIGR
Funding Organization: National Science Foundation
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read -- flanking 3' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.956 Expected Error Rate: 0.0024 Quality Trim Threshold: 12.5