EST details — SGN-E269117
| Search information |
| Request: 269117 | Match: SGN-E269117 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C47489 | Clone name: cLEI-16-G23 |
| ||
| Library Name: cLEI | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: whole seedlings
Development Stage: germinating seed
Microarray: Alias clone SGN-C177672 is on microarray TOM1: SGN-S1-1-3.3.6.11
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C177672 [TUS-27-C14] | Trace: SGN-T1457 | EST: SGN-E378535 | Direction: 5' | Facility: Giov. Lab |
| Clone: SGN-C177672 [TUS-27-C14] | Trace: SGN-T182923 | EST: SGN-E370548 | Direction: 3' | Facility: INRA |
| Clone: SGN-C177672 [TUS-27-C14] | Trace: SGN-T182924 | EST: SGN-E370549 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E269117 | Length: 591 bp (842 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E269117 [] (trimmed)
CAGGCTGGTCCTATCAACCTCACCTCCGCCGTCCCTGTCTCGTGCAAATCACGTGCTGGTTCCGCCGGACACTCTTCGTTACCGTCCTCCGGCCT
CTGCACTATCGCGAAATGCCCACTTGAAGATATTGAAATTTCTGATTGCAAGTCCAATACGTGTCCCCCTTTTTACTATGCTTATGGTGATGGAA
GTAACATCGCGAAGCTTTACAGCGAAGAATTATCAATACCCATGTGGTCTCCATCGTTGATTTTGAAGAATTTTACATTTGGGTGAGCTCACAGT
GCTCTCGGTGAACCCATCGGAGTAGCTGGATTTGGCCGGGGGACACTTTCATTGCCGGCGCAACTCGCGAATAACTCCCCGGAAATCGGAAATTA
CTTCTCTTATTGTTTAGTTTCTCACACTTTTGACACGAATCAAGTTCATCGACCCAGTCCGCTCATTCTCGGCCGATACTCAATCGATGAAAAAA
TGAAACAGATGAAGAATTATTACTCCGATTACGCTTACACCCCAATGCTCGAGAACCCAAAACATCCATATTTCTACAGCGTCGGACTCGAAGGT
GTATCAATCGGAAAAACAAAA
CTGCACTATCGCGAAATGCCCACTTGAAGATATTGAAATTTCTGATTGCAAGTCCAATACGTGTCCCCCTTTTTACTATGCTTATGGTGATGGAA
GTAACATCGCGAAGCTTTACAGCGAAGAATTATCAATACCCATGTGGTCTCCATCGTTGATTTTGAAGAATTTTACATTTGGGTGAGCTCACAGT
GCTCTCGGTGAACCCATCGGAGTAGCTGGATTTGGCCGGGGGACACTTTCATTGCCGGCGCAACTCGCGAATAACTCCCCGGAAATCGGAAATTA
CTTCTCTTATTGTTTAGTTTCTCACACTTTTGACACGAATCAAGTTCATCGACCCAGTCCGCTCATTCTCGGCCGATACTCAATCGATGAAAAAA
TGAAACAGATGAAGAATTATTACTCCGATTACGCTTACACCCCAATGCTCGAGAACCCAAAACATCCATATTTCTACAGCGTCGGACTCGAAGGT
GTATCAATCGGAAAAACAAAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E269117] | SGN-U568241 | Tomato 200607 | Build 2 | 19 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T83341 [Download][View] | Facility Assigned ID: TGSCI48TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.985 | Expected Error Rate: 0.0168 | Quality Trim Threshold: 14.5 |
Working
