Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

EST details — SGN-E376842

Search information 
Request: 376842Match: SGN-E376842
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C174821Clone name: TUS-19-L19
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C174821 is on microarray TOM1 spot ID 1-1-6.4.15.14 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C23620 [cLED-5-O16] Trace: SGN-T49643 EST: SGN-E231027 Direction: 5' Facility: TIGR
Clone: SGN-C174821 [TUS-19-L19] Trace: SGN-T189455 EST: SGN-E376841 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E376842Length: 645 bp (893 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E376842 [] (trimmed) TAAGAATGGAAATGGTTAACAAGATTGCATGCTTTGTGCTTTTATGCATGGTAGTGGTTGCACCCCATGCAGAGGCTTTAACTTGTGGTCAAGTT
ACATCTACCTTGGCTCCTTGTCTCCCTTATCTAATGAACCGCGGTCCTCTCAGAAACTGTTGTGATGGTGTTAAGGGTCTTTTGGGTCAAGCCAA
GACTACAGTAGACCGACAGGCCGCATGCACTTGCCTAAAATCAGCTGCTTCTTCTTTTACAGGACTCAATTTGGGCAAAGCTGCTGCTCTCCCTA
ACACTTGTAGTGTCAACATCCCTTACAAGATCAGCCCCTCTACTGACTGCTCTAAAGTTCAGTAAAGCTGATCATCAGAATTTGGTTTCATGAGG
AGAATTAAGAATAAGATAGATAGCATTGATCTTGCTTATGGATCCTTTCTTTCTATGTTGTATCAGTTGTCACTTTCTCTTTTTTCTGTGTTTCG
TTTAAAATCGTATGTACTCGAGTCTTGTTTCGAAATTTGACGATTGATTATATTATATCAGTTGTTACTTTCTGTTTTCCTGTGTTTCTTTTAAA
ATCGTGTGTAGTCGAGTCTTGTATCGAAATTTTACGATTGGCTATGTTGTATTAATCTAATCTTTTATAAACACA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E376842] SGN-U581465 Tomato 200607 Build 2 445 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T189456 [Download][View] Facility Assigned ID: FA0AAD7CF10RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read -- flanking 3' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.960 Expected Error Rate: 0.0098 Quality Trim Threshold: 12.5