EST details — SGN-E392628

Search information 
Request: 392628Match: SGN-E392628
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C180960Clone name: TUS-35-L14
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C180960 is on microarray TOM1 spot ID 1-1-3.4.17.16 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C180960 [TUS-35-L14] Trace: SGN-T199204 EST: SGN-E397878 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E392628Length: 611 bp (853 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E392628 [] (trimmed) GGGTACCGGGCCCCCCCTCGAGACTAGTTCTCTCTCTCCTCAAAATCCCCTTTTATCTCCTCACCTTTTCTCTTTCTTTCTCCCTGTATATCTAT
ATATCAACATACAAAGAATCAGTCTTTTTTGTTTTTCCTTATACAAACATGCCTAATTCTGGTAAAATTCGTAATTTTTTCCTTGCCCCAATTAT
TTTCTTGGCGATTCTTGGATACCAGTTGAAGACAACTGATGGGTTTGGGACATTCGGGTTTGATATCCATCACCGGTATTCGGATCCGGTAAAGG
GTATTTTGGACCTTCATGGGTTGCCTGAGAAGGGGACTGTTGAATATTATTCAGCTTGGACTCAACGTGATCGGTTTGTTAAGGGCCGTCGCCTT
GCTGATACAACTAATCCCACAGTGCCCCTTGCTTTTTCTGGAGGAAATGAAACTTTGCGGCTCAGTTCTTTGGGATTCTTGCATTATGCAAATGT
CACTGTGGGCAGTCCTGGGCTATCATTTCTAGTGGCACTTGACACTGGCAGTGACTTATTTTGGCTACCATGTGATTGCAGCAACTGTGTGCGTG
CCCTTCAAACACGCAGTGGAAGACGAATAAATCTTAATATC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E392628] SGN-U574299 Tomato 200607 Build 2 29 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T193954 [Download][View] Facility Assigned ID: FA0AAD23DF07FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: Multiple cloning site sequence detected -- chimeric clone suspected.
Passed all screens and filters
Sequence Entropy: 0.974 Expected Error Rate: 1.0000 Quality Trim Threshold: 14.5