EST details — SGN-E393785
| Search information |
| Request: 393785 | Match: SGN-E393785 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172723 | Clone name: TUS-14-E9 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172723 is on microarray TOM1 spot ID 1-1-8.1.20.6 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C10854 [cLEC-6-H17] | Trace: SGN-T23998 | EST: SGN-E202337 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172723 [TUS-14-E9] | Trace: SGN-T195112 | EST: SGN-E393786 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172723 [TUS-14-E9] | Trace: SGN-T195743 | EST: SGN-E394417 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172723 [TUS-14-E9] | Trace: SGN-T195743 | EST: SGN-E399519 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172723 [TUS-14-E9] | Trace: SGN-T200172 | EST: SGN-E398921 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E393785 | Length: 624 bp (856 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E393785 [] (trimmed)
AATCTATTCAAACATTATTTTTATTAAAATAATATGATATATTATAAAACGATATACAATAACTATATATAGCATTCTTTTGATAATATTTTCAA
AGAGTTGCGTTTTTTGACCGTAACAACTATATCCAGATAAGTTATACGTTACCTATTGTATGTGATAATGGGAAAACAATGTTATGTATCGAAAC
ATTATATATATTAAAACGATATATTATGAAATAATATGTAATAACTATCCAGTAAGTCGTCAAACCTTTTTTGGAATCACTTTCAAAGAGTCGCG
TTTTCTAGCTGTTACTCCCATGCTTTCATCCATATTAATAGATTTAGGAGACACACCATCTGGAAGCTCCCAATCGAATTCATGAAGCAACGATC
CAAGAGCGAAATGCATCATTCGATGGCCTAAAGGCAAACCAACACACATTCTTCGTCCTGCACCAAATGGAATTAGCTCATAATGCTGACCCTTC
ACGTCCAATTTCGAGCCAAGAAACCTCTCGGGCTTGAAACTCATAGGGTCGTCCCAACATTCAGGATCTCTTCCAATTGCCCAGGCATTTACGAG
GACTCGAGTCCCTTTTAGCACGTCGTACCCCATGAACTTAGTGTCTTGAATTGT
AGAGTTGCGTTTTTTGACCGTAACAACTATATCCAGATAAGTTATACGTTACCTATTGTATGTGATAATGGGAAAACAATGTTATGTATCGAAAC
ATTATATATATTAAAACGATATATTATGAAATAATATGTAATAACTATCCAGTAAGTCGTCAAACCTTTTTTGGAATCACTTTCAAAGAGTCGCG
TTTTCTAGCTGTTACTCCCATGCTTTCATCCATATTAATAGATTTAGGAGACACACCATCTGGAAGCTCCCAATCGAATTCATGAAGCAACGATC
CAAGAGCGAAATGCATCATTCGATGGCCTAAAGGCAAACCAACACACATTCTTCGTCCTGCACCAAATGGAATTAGCTCATAATGCTGACCCTTC
ACGTCCAATTTCGAGCCAAGAAACCTCTCGGGCTTGAAACTCATAGGGTCGTCCCAACATTCAGGATCTCTTCCAATTGCCCAGGCATTTACGAG
GACTCGAGTCCCTTTTAGCACGTCGTACCCCATGAACTTAGTGTCTTGAATTGT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E393785] | SGN-U580161 | Tomato 200607 | Build 2 | 41 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195111 [Download][View] | Facility Assigned ID: FA0AAD2AC05FM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.951 | Expected Error Rate: 0.0036 | Quality Trim Threshold: 12.5 |
Working
