EST details — SGN-C39556
| Search information |
| Request: 39556 | Match: SGN-C39556 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C39556 | Clone name: cLEG-4-J23 |
| ||
| Library Name: cLEG | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: breaker fruit
Microarray: Alias clone SGN-C183384 is on microarray TOM1: SGN-S1-1-3.1.1.2
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C183384 [TUS-42-A14] | Trace: SGN-T196126 | EST: SGN-E394800 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183384 [TUS-42-A14] | Trace: SGN-T200269 | EST: SGN-E399217 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183384 [TUS-42-A14] | Trace: SGN-T200452 | EST: SGN-E399568 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E250008 | Length: 502 bp (570 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E250008 [] (trimmed)
CAGAAAGCAAGAGAGGAAGCTCTTATAGCAAGTCAAGCTAGGAGTTCATTTCAGACGGTTATGAGCCATCGATTGAGAAGACCAATGCACTCAAT
TTTGGGTCTGCTCTCGATGTTGCAGGAACAGAAGTTACGAGATGAACAACAGCTTCTTGTGCATTCTATAATCAAATCCAGCAATGTTGTCTCCA
CCCTGATGGATGATGTGATAGTTACTTCAACCAAGGAGAACGTAAAATTCCCATTGGAAATGAAGCATTTTCAGCTGCATTCCTTGATACGAGAA
GCTGCTTGTACCGCCAAATCTTTGTGTATGTATAAGGGTTACAACATCACCATTGAGGTCGAAAAATCATTTCCTAATAAAGTCATGGGAGACGA
AAGAAGATTTTTTCAAGTTTTGCTTCATATAATTGGAAATCTTTTGAATGGCATCCACGGAGGACATCTTACCTTCAAAGTTCTCTCAGCAAGTG
AAAACGATGTTAGTTGGAAAACACCGA
TTTGGGTCTGCTCTCGATGTTGCAGGAACAGAAGTTACGAGATGAACAACAGCTTCTTGTGCATTCTATAATCAAATCCAGCAATGTTGTCTCCA
CCCTGATGGATGATGTGATAGTTACTTCAACCAAGGAGAACGTAAAATTCCCATTGGAAATGAAGCATTTTCAGCTGCATTCCTTGATACGAGAA
GCTGCTTGTACCGCCAAATCTTTGTGTATGTATAAGGGTTACAACATCACCATTGAGGTCGAAAAATCATTTCCTAATAAAGTCATGGGAGACGA
AAGAAGATTTTTTCAAGTTTTGCTTCATATAATTGGAAATCTTTTGAATGGCATCCACGGAGGACATCTTACCTTCAAAGTTCTCTCAGCAAGTG
AAAACGATGTTAGTTGGAAAACACCGA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E250008] | SGN-U581694 | Tomato 200607 | Build 2 | 10 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T64622 [Download][View] | Facility Assigned ID: TBFAO60THB |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.967 | Expected Error Rate: 0.0092 | Quality Trim Threshold: 14.5 |
Working
