EST details — SGN-E378515
| Search information |
| Request: 378515 | Match: SGN-E378515 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C175519 | Clone name: TUS-21-I21 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C175519 is on microarray TOM1 spot ID 1-1-4.1.13.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C15409 [cLED-11-N21] | Trace: SGN-T51388 | EST: SGN-E235378 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C175519 [TUS-21-I21] | Trace: SGN-T190279 | EST: SGN-E377088 | Direction: 3' | Facility: INRA |
| Clone: SGN-C175519 [TUS-21-I21] | Trace: SGN-T190280 | EST: SGN-E377089 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378515 | Length: 796 bp (1163 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378515 [] (trimmed)
GATCCCCCGGGCCTGCAGGCAAAGGTAAAAAGGAAAAAAATACTGAAACATACGTCTTATGTTTTCCTTATTTCTAATATTCCCTTCTATTTCTA
AAAATCTCTAAAATTTATAATTTCTCTCCTAATTCTAAATTATTTTATACGTATCCGAACTAGTTTTTAATGTATCCGATCTATATATTATGTAT
CGGTTTATTTTATAATGTATCCGAGCTACATATTATGTATCTAAGCTAGTTTTAAAAGCATCTGAGCTACATATTATGTACCCGACTTTTTTTAT
TTTTTTCATAAATCAATGTAATTACAAACTAAATAAGGATAGATTATAATTTCATATTAAAACTATGCCTAAAATTTATACGAATAAAAACGGCC
AAAAGAAAGATATTGGGGGCCCAATTCAAAAGCCCATATATGAACAAAAACGGACTCAAATTTTGACCCGAATCAAAGACTCAATTTCAATTAAC
TCCATAGATTTCTTCTTCAGCTTGAGCTCTACTGCAAAAAACCCCCCTTTTAACCAAATTTTTAAAATCAAATTAAAGTTCCATTTTTTTCTTAA
TTTTTAACTAAATAGTTGCATTTGTATCCTAATTTGCTCTTAATTAATGTTAATAATAGTGAAAAGTGAAGCTCTGGAGCAAACTTATAATTGTA
GGTCACGAGTTCGAGCCGTGGAACGAGTGTAAGCCCCTTTTCTATTATAAAGTAATGTTTTTTTTTATGCTATAAAAATTAAATCTTGATATCTT
AATTCTGGTGCCCTGTAAAACTGAAGATTTTTTTTT
AAAATCTCTAAAATTTATAATTTCTCTCCTAATTCTAAATTATTTTATACGTATCCGAACTAGTTTTTAATGTATCCGATCTATATATTATGTAT
CGGTTTATTTTATAATGTATCCGAGCTACATATTATGTATCTAAGCTAGTTTTAAAAGCATCTGAGCTACATATTATGTACCCGACTTTTTTTAT
TTTTTTCATAAATCAATGTAATTACAAACTAAATAAGGATAGATTATAATTTCATATTAAAACTATGCCTAAAATTTATACGAATAAAAACGGCC
AAAAGAAAGATATTGGGGGCCCAATTCAAAAGCCCATATATGAACAAAAACGGACTCAAATTTTGACCCGAATCAAAGACTCAATTTCAATTAAC
TCCATAGATTTCTTCTTCAGCTTGAGCTCTACTGCAAAAAACCCCCCTTTTAACCAAATTTTTAAAATCAAATTAAAGTTCCATTTTTTTCTTAA
TTTTTAACTAAATAGTTGCATTTGTATCCTAATTTGCTCTTAATTAATGTTAATAATAGTGAAAAGTGAAGCTCTGGAGCAAACTTATAATTGTA
GGTCACGAGTTCGAGCCGTGGAACGAGTGTAAGCCCCTTTTCTATTATAAAGTAATGTTTTTTTTTATGCTATAAAAATTAAATCTTGATATCTT
AATTCTGGTGCCCTGTAAAACTGAAGATTTTTTTTT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378515] | SGN-U564525 | Tomato 200607 | Build 2 | 16 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1373 [Download][View] | Facility Assigned ID: TUS21I21.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.908 | Expected Error Rate: 0.0031 | Quality Trim Threshold: 14.5 |
Working
