EST details — SGN-E539202
| Search information |
| Request: 539202 | Match: SGN-E539202 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C189838 | Clone name: TUS-58-N12 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
See unigene SGN-U577253 for alternative clones/ESTs which are mapped
| Additional sequencing |
| Clone: SGN-C69572 [cLER-11-J4] | Trace: SGN-T94160 | EST: SGN-E279408 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C189838 [TUS-58-N12] | Trace: SGN-T349057 | EST: SGN-E548182 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E539202 | Length: 722 bp (908 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E539202 [] (trimmed)
AAGTCCAAAAAAGCTGGTATTAATCACAAAATGACATTACATGGATACATATGCAACTTTAATTTCCTGAGTTTTCATTACACCTCAAAAAGAGA
AGGGCAATACTAAAAGGAAAATGTTGAAATTGATGGGAACTCAAATCAACTTTTACAAAACAGAGGTGTGAAAAAAATTAGTTGACAGTAACTTT
GCCAACCATTCCAGCTCCCTGGTGAGGTGCACAGTAGAAAGTGTAAGTTCCTTTCTCACTCAAAGTGACACTGTATGTCTCTCCTGCTGCATTCA
GAAGATCCTCTTCAGACATGGAAATCTTACTAGCATCCACACCAGCTGGGATTTCATCTTCATCAAATACGACGTTGTGTGGGAACCCTGCATTG
TTCTTGAATGTAATTTTCTCACCAGCACTAACGCTGAAGTTTCCAGGAATAAAAGCTAGACTCCCATCATCACCACCAAGCAACACTTCAAGTGC
CATGGCATTGCTAGCAAGCATCGCGCTAACAGCGGTGGCAGCAACCACAGCACCGACATCTTTCAAAGACGCCTTCACAGTCAATCTGGCAACTG
GGGCAGCTGCCACCTTAGCGGATGCACCGGTGCTAACTCTGGAAGATGATGAAGCACCAGCCTTAAGGCCAGTGAAAGATGGAATAGCAACAGCA
GCAGAGGTAACAGTGGCCATTGTTTATTAATATGCTTCTTGTTGTTGCTTTTGTGCT
AGGGCAATACTAAAAGGAAAATGTTGAAATTGATGGGAACTCAAATCAACTTTTACAAAACAGAGGTGTGAAAAAAATTAGTTGACAGTAACTTT
GCCAACCATTCCAGCTCCCTGGTGAGGTGCACAGTAGAAAGTGTAAGTTCCTTTCTCACTCAAAGTGACACTGTATGTCTCTCCTGCTGCATTCA
GAAGATCCTCTTCAGACATGGAAATCTTACTAGCATCCACACCAGCTGGGATTTCATCTTCATCAAATACGACGTTGTGTGGGAACCCTGCATTG
TTCTTGAATGTAATTTTCTCACCAGCACTAACGCTGAAGTTTCCAGGAATAAAAGCTAGACTCCCATCATCACCACCAAGCAACACTTCAAGTGC
CATGGCATTGCTAGCAAGCATCGCGCTAACAGCGGTGGCAGCAACCACAGCACCGACATCTTTCAAAGACGCCTTCACAGTCAATCTGGCAACTG
GGGCAGCTGCCACCTTAGCGGATGCACCGGTGCTAACTCTGGAAGATGATGAAGCACCAGCCTTAAGGCCAGTGAAAGATGGAATAGCAACAGCA
GCAGAGGTAACAGTGGCCATTGTTTATTAATATGCTTCTTGTTGTTGCTTTTGTGCT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E539202] | SGN-U577253 | Tomato 200607 | Build 2 | 198 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T340077 [Download][View] | Facility Assigned ID: TUS58N12_P1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.968 | Expected Error Rate: 0.0024 | Quality Trim Threshold: 14.5 |
Working
