EST details — SGN-E377998

Search information 
Request: 377998Match: SGN-E377998
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C175208Clone name: TUS-20-L22
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C175208 is on microarray TOM1 spot ID 1-1-3.4.13.8 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C24108 [cLED-7-D6] Trace: SGN-T50422 EST: SGN-E231913 Direction: 5' Facility: TIGR
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E377998Length: 665 bp (888 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E377998 [] (trimmed) CCACCATGGAGCTATAACATTAAATCACAATAATACATCCATTTTATTTTATTTTTCTAAAAAAATTGGGTCGCCGGAAAATCAAGATTCCGGTA
ACCCATAGTAATTATTTTGTTTATACATAGAAATTTTTTCTTTTCTGTCGCCTGGAGATTAAAAAAAGGTGATGATAAATGGCAAAGGGTCGGAA
ACTGGCCACGAGTCGCAGTGAAATGTTATTAGGAAACTACCCAAGCTATAGAAATGGAACTGCAACAGTCAACGGTTCCTCCGAACTAGGAGAAG
ATGATGTCTGGGCAACGGTTGATGACATGGATGATCACGATTCAAGGGGCGAGTGGAGTCCACGCGCCGCCGCTGAGGGTAACAACGGATACGTG
AACCGTAAGGTCCAACAATCCGACCACCACCACCACAGCCACCGCGGGCGCCAGGTTGGGGGCTTGTCATTGGCTTTCGATGATTCAGGTAAAAC
GGCATCTCCTCGAATCTTGCACCAGTTTCGCGGACAAGACGCGCCATCCCCACGTGTGGCACACATGGCCACGTCAGCACCTGTGAATGTCCCTG
ATTGGTCTAAAATATACCGAGTTAACTCGGTTGAATCGTTGCATGACTCGGACGATGGTGTTGATGATCATGACTCGGAGATGGTTCCGCCGCAT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E377998] SGN-U579930 Tomato 200607 Build 2 46 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T190220 [Download][View] Facility Assigned ID: FA0AAD8DF11RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.987 Expected Error Rate: 0.0008 Quality Trim Threshold: 14.5