EST details — SGN-E397790

Search information 
Request: 397790Match: SGN-E397790
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C185241Clone name: TUS-46-N23
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C185241 is on microarray TOM1 spot ID 1-1-2.2.11.3 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C77190 [cLES-20-D24] Trace: SGN-T102124 EST: SGN-E290445 Direction: 5' Facility: TIGR
Clone: SGN-C185241 [TUS-46-N23] Trace: SGN-T199064 EST: SGN-E397738 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E397790Length: 617 bp (846 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E397790 [] (trimmed) CATGATTAACAAGATGATATTATTTCTTTCTTTCTAGGGAAAAGTGCATCTAAAACATACTTATTTGAATAGATCCATTACAACACTAAAACTCT
ACAACCTGTACATTATTTCTGAAAACTTGTTAGTTTGCTCATTTCTATTGTCCCCAGTGGCTGTGGAAGGTAAGGCAAAGTCTGAACAGACAATT
CTTGTGCTACAGAACGCATGGTTGGTCGCGATTCAGGCGTGGTACGTGTACATGCCAAGGCAATCGTGATCACAAAAACCACTGCCTCTGCCAAG
TGGCCGGTGGGAGGAGGAAGTCTTTGGTCAAGAACATCCTTCAAAAGTATTTCCGGAGACAATGTTGTTGATGCTGATAATGAAGTTAAAAGCTC
CCCTGGATGCCTTCCCATCATAGTCTCCATCGCTACGACTCCAAAACTATAGACATCACACTTTTCTGTAACACGCATGGTAAGTGCAAGCTCTG
GTGCCATATAGCCATAAGAACCAGCAACTGTGGTCCAATTTGATGAGTCGGAAGCTAACAACTTTGCTGTGCCAAAGTCAGAGAGTCGTGGCCCG
AATTCTGATTCAAGCAAAATGTTATTCAATGATACATCACGGTGAAC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E397790] SGN-U564935 Tomato 200607 Build 2 7 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T199116 [Download][View] Facility Assigned ID: FA0AAD34CG12FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read -- flanking 5' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.974 Expected Error Rate: 0.0023 Quality Trim Threshold: 12.5