EST details — SGN-E398728

Search information 
Request: 398728Match: SGN-E398728
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C184899Clone name: TUS-45-P17
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C184899 is on microarray TOM1 spot ID 1-1-8.4.14.18 [Order] [Tomato Microarray Database]
See unigene SGN-U577253 for alternative clones/ESTs which are mapped
Additional sequencing 
Clone: SGN-C132433 [cTOD-2-K9] Trace: SGN-T141977 EST: SGN-E329363 Direction: 5' Facility: TIGR
Clone: SGN-C184899 [TUS-45-P17] Trace: SGN-T198759 EST: SGN-E397433 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E398728Length: 297 bp (884 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E398728 [] (trimmed) GAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAA
CTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGT
GTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGCAAAAGAAAATACA
GCATACGCCGAG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E398728] SGN-U577253 Tomato 200607 Build 2 198 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T200054 [Download][View] Facility Assigned ID: FA0AAD33CH09RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.917 Expected Error Rate: 0.0018 Quality Trim Threshold: 14.5