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Unigene SGN-U199421

Unigene Basic Information

Unigene ID:	SGN-U199421
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	199421
mRNA sequence:	Length: 273 bp

>SGN-U199421 Capsicum annuum #1 (1 members)
ATGAAAAGGAACCCATAATCAATTGCTGTCCAGTTTGTGGCGAAGTTCTTGAAGTTTCGGATGGGTTGAATAACATGATTCATATGACCT
TGTGTTTTGATGAGGGGACTGGGAATCAGGTTATGACAGGAGGATTCTTGACTGATAAGGAGGCTTCACGTGGATGGATGTCCAAACTGA
CTGAATGGGCCCATCCCTCAACTTTTGATATCGGTTTAAGGTCTGGTTCAACTGCATCGCATATCTTGGCTTATGACCGCCAAAACAAAA
GGC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS12	Placenta	4279	1

mRNA member sequences (1)

To view details for a particular member sequence, click the SGN-E# identifier.
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Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|34905784\|ref\|NP_914239.1\|	148.7	1.9e-35	73.33	270 bp (98.9%)	3
Description:	gi\|34905784\|ref\|NP_914239.1\| putative phosphatidylserine decarboxylase [Oryza sativa (japonica …
arabidopsis	blastx	At5g57190.1	146.4	2.4e-36	73.33	270 bp (98.9%)	3
Description:	At5g57190.1 68412.m06467 phosphatidylserine decarboxylase, putative similar to SP\|P53037 Phosph…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P33983 (91 Aa)

EKEPIINCCPVCGEVLEVSDGLNNMIHMTLCFDEGTGNQVMTGGFLTDKEASRGWMSKLTEWAHPSTFDIGLRSGSTASHILAYDRQNKR
X

SignalP predicts non-secretion with a score of 0.055

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P153426 (90 Aa)

EKEPIINCCPVCGEVLEVSDGLNNMIHMTLCFDEGTGNQVMTGGFLTDKEASRGWMSKLTEWAHPSTFDIGLRSGSTASHILAYDRQNKR

SignalP predicts non-secretion with a score of 0.055

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1203	PS_Dcarbxylase PS_decarb EF-hand	16
2	24197	PS_Dcarbxylase Porphobil_deam PS_decarb PS_decarb_rel EF-hand	9
5	59511	PS_Dcarbxylase Porphobil_deam PS_decarb PS_decarb_rel EF-hand	6
1.1	102714	Phosphatidylserine decarboxylase-related - Molecular Function: phosphatidylserine decarboxylase activity (GO:0004609) - Biological Process: phospholipid biosynthesis (GO:0008654) Phosphatidylserine decarboxylase	11
2	121236	Phosphatidylserine decarboxylase-related - Molecular Function: phosphatidylserine decarboxylase activity (GO:0004609) - Biological Process: phospholipid biosynthesis (GO:0008654) Phosphatidylserine decarboxylase Calcium-binding EF-hand - Molecular Function: calcium ion binding (GO:0005509) EF-Hand type - Molecular Function: calcium ion binding (GO:0005509)	7
5	131471	Phosphatidylserine decarboxylase-related - Molecular Function: phosphatidylserine decarboxylase activity (GO:0004609) - Biological Process: phospholipid biosynthesis (GO:0008654) Phosphatidylserine decarboxylase Calcium-binding EF-hand - Molecular Function: calcium ion binding (GO:0005509) EF-Hand type - Molecular Function: calcium ion binding (GO:0005509)	7

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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