Sol Genomics Network

Unigene SGN-U269522

Unigene Basic Information

Unigene ID:	SGN-U269522
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269522
mRNA sequence:	Length: 1423 bp

>SGN-U269522 Solanum tuberosum #4 (31 members)
CCTCCTCCTCTTAGAATATTCTTAATAGTTTTGAAGACTAGTCTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATC
AATCCTCTCTACGGTCCTTTTCCGAGGGATTGACTAATAATGTTGGGAGGTAGAGCAGTCCATCGGTTACTAGGCAGGAAATTTCAATCT
GAATCCACGGCATCTCCAATTTTATCACCCTTTGTTTCCAAAAAAACTCAAGAAGAATTTGGATCTTTTGGCATGAAGTCCTTCAGAACA
TTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGTCCA
AGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCA
TCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAGGAAGTAAAGGCTATGGCAGCTGAGATT
GAGGTGGAGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAA
GCTGCTGCTAGATTTGCTAATGGGGGGGCCTACCCTCCAGATTTAAGTCTTATTACAAAAGCACGCCATAATGGTCAAAACTATGTGTTT
GCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCGATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATT
GCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAGATGGGGAAAGATGTGGTGTCA
TTTTTAACTTGGGCTGCTGAACCAGAGATGGAAGAGAGAAAACTGATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTACTTCAA
GCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGGAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAAT
GCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGCTTTTGTTGTTTGACGTCTTACTCTGGAATGGCCTGGTTTTTGGTAAAGC
GAACAGGCTAAAATTTTCCTTCTATTTGGAGTTGAAATAAGAGGCCCGTGTAATTTTTATAGTGGGGAGACATTCTCGCCTTGTTTTTGA
GGCTGTAACCTGTTTGTGGAGTTGTCTGGCTGTTGTGAAACTTTGCTCTCCAGATTTTTAGTTTTGTGACTTGACATACAATTTTATTGC
ACTTAAAAAAAATCCTATTCCAAGGGTTACCAATACGATTAATCAGATAAGAATTTTACTAGTAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
X79597	X79597 cytochrome c1	cytochrome c

Genomic locations (0)

None

Library representation (13)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	IVROOT	Root	5850	2
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	2
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	STOL	Stolon	6462	2
Solanum tuberosum	SWST	Stolon	5942	3
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	5
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	5
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	3
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (31)

To view details for a particular member sequence, click the SGN-E# identifier.
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Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 6 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	932	Cyt_C1 CytC_heme_BS	20
2	22743	Cyt_C1 CytC_heme_BS	20
5	56886	Cyt_C1 CytC_heme_BS	20
1.1	102259	Cytochrome c1 - Molecular Function: electron transporter activity (GO:0005489) - Cellular Component: mitochondrial electron transport chain (GO:0005746) - Biological Process: electron transport (GO:0006118) Cytochrome c region - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037) Cytochrome c monohaem	18
2	119268	Cytochrome c monohaem Cytochrome c1 - Molecular Function: electron transporter activity (GO:0005489) - Cellular Component: mitochondrial electron transport chain (GO:0005746) - Biological Process: electron transport (GO:0006118) Cytochrome c region - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037)	18
5	129615	Cytochrome c monohaem Cytochrome c1 - Molecular Function: electron transporter activity (GO:0005489) - Cellular Component: mitochondrial electron transport chain (GO:0005746) - Biological Process: electron transport (GO:0006118) Cytochrome c region - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037)	18

Preceding Unigenes (1)

Unigene	Build
SGN-U244158	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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