Sol Genomics Network

Unigene SGN-U580048

Unigene Basic Information

Unigene ID:	SGN-U580048
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 2438 bp

>SGN-U580048 Tomato 200607 #2 (86 members)
GCTCCATCTCTTCACTTTCATTTCACTCTTTGTAGATCACACAAAAATGGCGGAGGCAGAGACGTTTGCATTTCAAGCTGAGATCAACCA
GCTTCTGAGTCTCATCATCAATACTTTTTATAGTAACAAAGAGATCTTTCTCAGGGAACTCATTAGTAACTCTTCTGATGCACTGGACAA
GATCCGTTTCCAGAGTTTGACTGACAAGAGCAAGCTAGATGCTCAACCTGAACTTTTCATTCACATCGTCCCTGACAAGACCAACAATAC
CCTCACAATCATTGACAGTGGTGTTGGTATGACAAAGGCTGATCTGGTGAACAACCTTGGTACAATTGCTAGGTCTGGCACCAAGGAATT
TATGGAGGCCATTGCTGCTGGTGCTGATGTTAGCATGATCGGGCAATTTGGTGTTGGTTTCTATTCTGCTTATTTGGTTGCTGAGAGGGT
GGTTGTGACCACAAAGCACAATGATGATGAACAATATGTTTGGGAATCACAAGCTGGTGGTTCATTCACTGTTACGAGAGATACATCTGG
TGAGAACCTTGGCAGGGGTACCAAAATGACCCTCTTCCTCAAGGAGGACCAGCTTGAATACCTTGAGGAGCGAAGGCTCAAGGACCTTAT
TAAGAAGCATTCTGAGTTCATCAGCTATCCAATCTCTTTGTGGGTTGAGAAGACCATAGAAAAGGAAATCTCGGATGATGAGGACGAAGA
GGAGAAGAAAGATGAGGAAGGAAAGGTAGAGGAGGTTGATGAAGAAAAGGAGAAGGAAGAGAAGAAAAAGAAGAAAATTAAGGAAGTCTC
TAATGAGTGGTCATTGGTTAATAAGCAGAAGCCCATATGGATGAGGAAGCCCGAGGAGATCACAAAAGAGGAGTATGCTGCATTCTACAA
GAGCCTGACAAATGATTGGGAAGAGCATTTGGCTGTCAAGCACTTCTCTGTTGAAGGTCAGCTTGAGTTTAAGGCTGTTCTTTTTATTCC
AAAGAGAGCTCCTTTTGACCTCTTTGACACCAAGAAGAAGCCCAACAATATCAAGCTCTATGTTCGCCGTGTGTTCATCATGGATAACTG
TGAGGAATTGATTCCTGAATATTTGAGCTTTGTGAAGGGTATTGTGGATTCTGAAGATCTTCCCCTCAACATCTCTAGAGAGATGTTGCA
GCAGAATAAGATCCTGAAGGTTATTCGCAAAAACTTGGTGAAGAAGTGCATTGAGCTATTCTTTGAAATTGCTGAAAACAAAGAAGACTA
TAACAAGTTCTATGAGGCCTTCTCAAAGAACCTCAAGCTTGGTATCCATGAGGATTCACAGAACAGGTCTAAGTTTGCTGAACTGCTGAG
ATATCACTCCACAAAAAGTGGTGATGAGATGACCAGCTTGAAGGACTATGTAACCAGGATGAAAGAAGGCCAGAATGATATTTACTACAT
TACTGGTGAGAGCAAGAAGGCTGTTGAGAACTCACCCTTCCTTGAGAAGCTGAAGAAGAAGGGTTATGAGGTTCTTTACATGGTTGATGC
TATTGATGAGTATTCAATTGGTCAATTGAAGGAATTTGAGGGTAAGAAGCTTGTTTCTGCTACCAAGGAAGGCCTCAAGCTTGAGGAGAC
TGAAGATGAGAAGAAAAAGCAAGAAGAACTAAAGGAGAAGTTTGAGGGTCTTTGCAAGGTGATTAAGGATGTTCTAGGTGACAAGGTTGA
GAAAGTGGTGGTCTCTGACCGTGTAGTGGATTCTCCTTGCTGCTTGGTTACTGGAGAGTATGGTTGGACTGCCAACATGGAGAGAATCAT
GAAGGCACAAGCTCTCAGGGACTCTAGCATGGCTGGATACATGTCTAGCAAGAAGACCATGGAGATCAATCCTGAGAATGCCATCATGGA
TGAGCTCAGGAAGAGAGCTGATGCTGATAAGAATGACAAGTCCGTCAAGGATTTGGTTCTATTGTTGTTTGAGACTGCTCTTCTCACTTC
AGGTTTTAGCCTTGATGAGCCAAACACATTTGGCAACAGAATTCACAGGATGCTGAAGCTTGGTCTGAGTATCGATGAGGATGGTGGAGA
TGCTGAAGCTGACATGCCAGCATTGGAGGATCCTGAAGCTGATGCCGAGGGCAGCAAGATGGAAGAAGTCGACTAAATCTATAGGATGCC
GGTGTTTTGTTTTGATTATTATGAAGCCCTTAACCCCAGTAGTTTTTGTTTCTTCTACTCAGCTCCACCATCTGGACATGATATGTTTTG
TTTTTACTGCATTCTAAGAGTAGTATTCATTGGCTCATTTTGTTACAACGTTTTATGTGACAATAGAATCTGTACTTTGCCTAATTGCTT
ATTGCGTTCTTGTATGGAAGTCTGCCTAGTTAACTTGCAGTATATGCCTTAGGATTGATTGGTCGTGACTAAGTGGTCCAAAGACTCTGT
TTTATTGG

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
Hsp90-1	Heat shock protein 90-1	defense signal transduction

Genomic locations (0)

None

Library representation (32)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	6
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	2
Solanum lycopersicum	LA	Leaf Mature leaves	6589	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	5
Solanum lycopersicum	LeMiToLf01	leaf	30679	1
Solanum lycopersicum	LePS	root 5 weeks old plants	823	1
Solanum lycopersicum	LeTrich01	Isolated leaf trichomes Apical internodes of 5-week old plants.	7299	3
Solanum lycopersicum	LeWpAFLP	whole plants, except for the roots	402	1
Solanum lycopersicum	Sl_RootInf01	root and collar Three weeks old	385	1
Solanum lycopersicum	Sl_RootSSH01	root	123	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	4
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	8
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	3
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	8
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	5
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	10
Solanum lycopersicum	cTOS	suspension cultures	8026	3
Solanum lycopersicum	cTSC	seed	2256	2
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (86)

Alignment image suppressed for unigene with 86 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (2)

Unigene	Build
SGN-U312354	Tomato 200607 #1
SGN-U312356	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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