Sol Genomics Network

Unigene SGN-U577771

Unigene Basic Information

Unigene ID:	SGN-U577771
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 2070 bp

>SGN-U577771 Tomato 200607 #2 (330 members)
GAATTGATCTCACTCTCATTTTCACTTCTTCCGATCATAGTTTTCATCGCCTCTCGTTAACTTCTAGATCTTCAACAAAAATGGCCAAAG
ATCCAGTTCGCGTTCTCGTTACTGGTGCTGCAGGACAAATTGGATATGCCTTGGTGCCTATGATTGCCAGGGGAGTGATGTTGGGCGCAG
ATCAGCCTGTAATTCTCCACATGTTGGATATTCCACCTGCTGCTGAGGCACTGAATGGAGTGAAGATGGAATTAGTAGATGCTGCCTTCC
CTCTTCTTAAGGGTGTCGTTGCCACAACTGATGCTGTTGAGGCATGCACCGGTGTCAACGTTGCGGTCATGGTTGGAGGTTTCCCCAGGA
AAGAAGGCATGGAAAGGAAAGATGTGATGTCAAAGAATGTGTCTATTTACAAGTCCCAGGCATCTGCACTTGAGAAGCATGCAGCTCCCA
ACTGCAAGGTGTTGGTTGTTGCTAACCCTGCTAATACAAATGCATTGATCTTGAAAGAATTTGCACCATCCATTCCTGAGAAGAATATTA
CCTGTCTCACAAGGTTGGACCATAACAGGGCCCTCGGCCAAATCTCAGAGAGACTGAGTGTCCAAGTTAGTGATGTTAAAAATGTCATTA
TTTGGGGAAACCACTCATCATCACAGTATCCTGATGTCAACCATGCAACAGTTTCAACACCAGCTGGTGATAAGCCAGTCCGTGAACTTG
TTGCTGATGATGCATGGTTGAACGGTGAGTTCATTTCTACTGTACAGCAGAGGGGTGCTGCCATTATCAAGGCTAGAAAGCTTTCTAGTG
CCCTTTCCGCTGCTAGTTCTGCTTGTGATCACATTCGTGACTGGGTCCTTGGAACTCCAGAGGGAACTTTTGTTTCTATGGGTGTTTACT
CTGATGGGTCATACAATGTCCCAGCTGGGCTTATTTATTCCTTCCCAGTTACATGCAAAAATGGAGAATGGTCCATTGTTCAAGGTCTTC
CAATTGACGAGTTCTCAAGAAAGAAGTTGGACTTGACAGCCGAGGAACTATCAGAGGAAAAAGCATTGGCTTACTCCTGCCTTGCTTAAA
TTGCCCGAATATCCTAAACTGCCTTTTAACCATATGAGGAGTGTATGTGGTAATAGAAGAAGTGGCTTCAGTTTTGAATAAGGCCATTGT
TGATTCTTGAGGGAAGTGATGATGGGGGAATACTGCTTTCTCAGTTGTTTACTCTTATTGTACTCTATTTTATGCCAAAATTTCGAGATA
GAACAGATGTCTTTTGCGAATAATTAGAGCATCTTTTGTTCGCCCTTGGATGATGATTTTCCTTAATGAGCAAGTTTTTGTTCTTGCCCA
CCAAAATGAGAGCAAAGAAAAGAAAAGAAAAGAAAAGAATTGTAAAAAATGGCTAGTATTTCTGGTACAATGATTAGCACTTCTTTCCTT
CCAAGAAAGCCAGCTGTGACTAGCCTCAAAGCCATATCAAATGTTGGTGAAGCTTTGTTTGGTCTTAAATCTGGTAGAAATGGGAGGATT
ACTTGCATGGCCAGTTACAAAGTGAAGCTTATTACACCAGAAGGACCTATTGAATTTGAATGCCCAGATGATGTTTACATTCTTGACCAA
GCTGAGGAAGAAGGACATGACCTTCCTTACTCATGCAGGGCTGGTTCTTGCTCATCTTGTGCTGGAAAAGTTACTGCTGGAAGTGTTGAT
CAGTCTGATGGAAACTTCCTTGATGAGGACCAAGAAGCTGCTGGATTTGTGCTTACTTGTGTTGCTTACCCAAAGGGTGATGTTACCATT
GAGACTCACAAGGAGGAGGAGCTTACTGCTTAAATTACAACCATTTCCATTTTAATAAAAAACAACACTTCATTTTGTTTCATGAGCATT
TACTTTTCACATTTTCCCTCTATTGTTATCACAAAAGTTGCTATCTAGTTATTTGTGACAACCCTTTTATCTCCTTACATAATGATGCAA
CTGTTTATTAATTAATTTTCATCTATATTGCTAAATTGGATACAATTTTCATGCTTTCCCATATATATAAGATTCATCCATGTTCATCAG

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
fer1	ferredoxin 1

Genomic locations (0)

None

Library representation (43)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	2
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	16
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	8
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	8
Solanum lycopersicum	LA	Leaf Mature leaves	6589	4
Solanum lycopersicum	LB	Leaf Mature leaves	3316	8
Solanum lycopersicum	LC	Leaf Mature leaves	5712	12
Solanum lycopersicum	LE08	Fruit 8 days post anthesis	339	1
Solanum lycopersicum	LeMiToFr02	fruit	18697	3
Solanum lycopersicum	LeMiToLf01	leaf	30679	5
Solanum lycopersicum	LeTransC6	leaf 1.5-month old plants	150	1
Solanum lycopersicum	LeTrich01	Isolated leaf trichomes Apical internodes of 5-week old plants.	7299	8
Solanum lycopersicum	Sl_FruitQTL	late maturation (breaker and red ripe)	663	1
Solanum lycopersicum	Sl_LeafWT01	leaf 1.5-month old plants	106	1
Solanum lycopersicum	Sl_RootGC01		128	1
Solanum lycopersicum	Sl_RootInf01	root and collar Three weeks old	385	1
Solanum lycopersicum	Sl_RootSSH03	root	149	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	12
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	4
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	8
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	18
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	22
Solanum lycopersicum	cLES	leaf 4 weeks	5243	26
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	69
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	7
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	2
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	7
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	9
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	5
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	8
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	22
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	cTSB	seed	1880	2
Solanum lycopersicum	cTSC	seed	2256	2
Solanum lycopersicum	cTSD	seed	1504	1
Solanum lycopersicum	vSlycmRNA		8362	3
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	12

mRNA member sequences (330)

Alignment image suppressed for unigene with 330 aligned sequences.
[Show Image]

Markers Information (1)

Expression Data (7)

Annotations (manual: 3 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (3)

Unigene	Build
SGN-U312385	Tomato 200607 #1
SGN-U333513	Tomato 200607 #1
SGN-U333517	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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