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Unigene SGN-U201241

Unigene Basic Information

Unigene ID:	SGN-U201241
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	201241
mRNA sequence:	Length: 409 bp

>SGN-U201241 Capsicum annuum #1 (1 members)
TCCGGTTGTTACAGAGATGACACTTCCATCGGAGCAGCCGAATCGCCGCCGGTAGCAAAGAAAAATGAACCTTTAAACGACGTCGTAAAC
AGTCGTAGAACCACCGAGCATTTGGATAATTCAATATGTATCAAATGTAAGGTTAATACAACCATCGCCGCCAGCACCGCCGACGTCTCC
GTCGTAGACGGCGGTGGTAGTGATGCCGGAAGATTCTGTGTAGATTGCTTCCGTAGTAATCTATTTGGGAAGTTTAGACTTGCTGTTACT
GCTAATGCTATGATTTCACCGTCGGATAATGTACTTGTTGCCTTCTCTGGTGGTACTTGCTCCAGGGTGGCTCTGCAGTTTATACATGAG
ATGCAAACCCAAAGCTCAGAAGAACTTTGATGCCAGTAGAGATAGAGCG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS10	Hairy root	2179	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E506869
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At4g35910 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|21553405\|gb\|AAM62498.1\|	98.98	2.7e-21	44	375 bp (91.7%)	1
Description:	unknown [Arabidopsis thaliana]
arabidopsis	blastx	At4g35910.1	98.98	1.4e-22	44	375 bp (91.7%)	1
Description:	At4g35910.1 68411.m04639 expressed protein
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P35757 (136 Aa)

SGCYRDDTSIGAAESPPVAKKNEPLNDVVNSRRTTEHLDNSICIKCKVNTTIAASTADVSVVDGGGSDAGRFCVDCFRSNLFGKFRLAVT
ANAMISPSDNVLVAFSGGLAPGWLCSLYMRCKPKAQKNFDASRDRA

SignalP predicts non-secretion with a score of 0.029

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P155295 (132 Aa)

LYLYWHQSSSELWVCISCINCRATLEQVPPEKATSTLSDGEIIALAVTASLNFPNRLLRKQSTQNLPASLPPPSTTETSAVLAAMVVLTL
HLIHIELSKCSVVLRLFTTSFKGSFFFATGGDSAAPMEVSSL

SignalP predicts non-secretion with a score of 0.277

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	3852	UPF0021	4
2	27172	UPF0021	4
5	64556		2
1.1	104498		4
2	123711		4
5	133884		4

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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