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Unigene SGN-U201697

Unigene Basic Information

Unigene ID:	SGN-U201697
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	201697
mRNA sequence:	Length: 407 bp

>SGN-U201697 Capsicum annuum #1 (1 members)
CAAGTCCTAATTAGTCCAACGATGACCATTTCTTCAGCTACTGCATTGGCACTCTCCTTCACCAACCGCTTCTCCCTCACCGGCTCCGCT
TTCCTCCGCCGTCAAACCTCACCGTCTTCCGCCATGAGCATCGCCGGTGAACAAAACTACAGTTCGGAGGCTGCTCATTTGGATTCAATC
TTCAAGCAGAAAAAGGCCCTCCGTTCCGTTGTTAAAAGAGATCTCAAATCTATGGATCCCACTCTTAGATCTCAACAAGATGAAGCAATA
CAAAAGATTGTGTNGGGGGCTCCATGGTTTAAGGGTTGCAAGGGATTGTGTGCTTACATTAGCTGTAGTGCTTTGCGAGAAGTAGATACA
ACCCAAATACTGTCTCATATTCTTGGAGGTCATCCAGAGATGCGAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS10	Hairy root	2179	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E505762
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At5g13050 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|22087556\|gb\|AAM90961.1\|	172.9	7.7e-43	75.81	363 bp (89.2%)	1
Description:	gi\|22087556\|gb\|AAM90961.1\| 5-formyltetrahydrofolate cycloligase [Lycopersicon esculentum]
arabidopsis	blastx	At5g13050.1	114.8	1.4e-26	61.22	294 bp (72.2%)	1
Description:	At5g13050.1 68412.m01380 5-formyltetrahydrofolate cyclo-ligase (5,10-methenyltetrahydrofolate s…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P36194 (136 Aa)

QVLISPTMTISSATALALSFTNRFSLTGSAFLRRQTSPSSAMSIAGEQNYSSEAAHLDSIFKQKKALRSVVKRDLKSMDPTLRSQQDEAI
QKIVXGAPWFKGCKGLCAYISCSALREVDTTQILSHILGGHPEMRX

SignalP predicts non-secretion with a score of 0.404

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P155759 (135 Aa)

QVLISPTMTISSATALALSFTNRFSLTGSAFLRRQTSPSSAMSIAGEQNYSSEAAHLDSIFKQKKALRSVVKRDLKSMDPTLRSQQDEAI
QKIVXGAPWFKGCKGLCAYISCSALREVDTTQILSHILGGHPEMR

SignalP predicts non-secretion with a score of 0.404

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	2956	FTHF_cligase	6
2	25689	FTHF_cligase	6
5	59686	FTHF_cligase	6
1.1	103640	5-formyltetrahydrofolate cyclo-ligase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	6
2	121859	5-formyltetrahydrofolate cyclo-ligase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	6
5	132065	5-formyltetrahydrofolate cyclo-ligase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	6

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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