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Unigene SGN-U203044

Unigene Basic Information

Unigene ID:	SGN-U203044
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	203044
mRNA sequence:	Length: 364 bp

>SGN-U203044 Capsicum annuum #1 (1 members)
GTCTTGGTTTTATGATGATGAAACTTACAATAATTTTGTGGTGAATCAAAGTGCTTTTGTGAACTTTGAGAGCAAATTAAGCGAAGGATT
TGGAGTTTATAGCTGTGGAAATGTATCGACGAATCATCGAAACATGAACAAGAGGGCGATGGAGTTCTTGAAGAAGAATTGGATATCGAA
AAATGGACAAGTGAAAATAGAAAAAGAAAAAGGTCATAAACATATGATTAAAGAGAGGATTATAAGAGAAAAGCAAAAGCAAAGTTATTC
GGCCTTGCATAAATTGCTTCCCATGGGAACTAAGGTCGAGAAGAATGCTATAGTCCAAACTGCATCAAGAAGAATTGAAGAGTTGCATAT
ATAC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS01	leave	6599	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E489423
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At5g43650 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 3 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15239929\|ref\|NP_199178.1\|	83.19	8.6e-16	50.62	243 bp (66.8%)	2
Description:	basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] >gi75309129\|sp\|Q9FIX5.1\|BH0…
arabidopsis	blastx	At5g43650.1	83.19	2.3e-17	50.62	243 bp (66.8%)	2
Description:	At5g43650.1 68412.m04810 bHLH protein family similar to unknown protein (pir\|\|T04030)
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0030528 transcription regulator activity
GO:0045449 regulation of transcription
GO:0005634 nucleus

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P37492 (121 Aa)

SWFYDDETYNNFVVNQSAFVNFESKLSEGFGVYSCGNVSTNHRNMNKRAMEFLKKNWISKNGQVKIEKEKGHKHMIKERIIREKQKQSYS
ALHKLLPMGTKVEKNAIVQTASRRIEELHIY

SignalP predicts non-secretion with a score of 0.033

IPR001092 Basic helix-loop-helix dimerisation region bHLH

Prediction based on longest six frame method

>SGN-P157132 (121 Aa)

SWFYDDETYNNFVVNQSAFVNFESKLSEGFGVYSCGNVSTNHRNMNKRAMEFLKKNWISKNGQVKIEKEKGHKHMIKERIIREKQKQSYS
ALHKLLPMGTKVEKNAIVQTASRRIEELHIY

SignalP predicts non-secretion with a score of 0.033

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	12	HLH_basic	493
2	26823	HLH_basic	4
5	64633		2
1.1	101381	Helix-loop-helix DNA-binding	441
2	125059	Helix-loop-helix DNA-binding Basic helix-loop-helix dimerisation region bHLH - Cellular Component: nucleus (GO:0005634) - Molecular Function: transcription regulator activity (GO:0030528) - Biological Process: regulation of transcription (GO:0045449)	3
5	137948		2

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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