Sol Genomics Network

Unigene SGN-U196184

Unigene Basic Information

Unigene ID:	SGN-U196184
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	196184
mRNA sequence:	Length: 1666 bp

>SGN-U196184 Capsicum annuum #1 (14 members)
TTGGAAAAAAAAAAAACTGCAGCCTTTACAAACCCTAATTCTCAAAAATCCTCATTTCCTCAAAATCTTTAGATCTTTCTTTAATAATCT
TCATATTAACTAATCGGTCATGGCAGGAATAGCACCAGAGGGTTCTCAGTTTGATACTCGTCAATTCGATGCGAAAATGACAGAGCTGCT
TGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTTACGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGGGG
CATCTATGCCTATGGTTTTGAGAAGCCATCTGCTATTCAACAAAGGGGTATCGTGCCGTTTTGCAAGGGCCTTGATGTTATCCAACAGGC
ACAATCTGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTCGAGTGTCAGGCTTTGGTTCT
TGCACCAACCCGTGAGCTAGCACAACAGATTGGGAAGGGTTATGCGAGCACTTGGTGGCTATCTGGGTGTAAAAGGTTCATGCTTGTGTT
GGGGGTACCAGTGTCCGGGAGGACCAGCGTATCCTTCAGAGTGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTTTTTGACATGTTG
CGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTATTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGATT
TATGATATCTTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCCACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAG
TTCATGAACAAGCCCGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAATGTGGATAAGGAA
GAGTGGAAGCTCGAAACGCTTTGTGATCTTTATGAGACCTTGGCCATCACCCAAAGTGTCATCTTCGTCAACACTAGGCGGAAGGTTGAT
TGGCTCACTGATAAAATGCGCGGACGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACAAGAGATATCATTATGAGG
GAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACTGATCTCCTTGCTCGTGGTATTGATGTCCAGCAAGTCTCCCTTGTTATTAAC
TACGACCTTCCAACCCAACCAGAGAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTT
ACCAAGGATGATGAAAGGATGCTTTTTGACATACAGAGGTTTTATAACGTCGTGATTGAGGAGCTGCCGGCCAATGTCGCTGATCTCCTT
TAAGGCGATTTTGGTTTTGTGATGGGAACTTTTCCTTCCCTACATGAAGTAGTCTAATATATTTGTTGTTAGTTTTAGTTTCACTTTGTA
CTGGGGAATTGGGAAATGCTGTTGCCATGATTTGCCACAGCACCAGTTACTTTCCCAATTCAGTTGAACTTGAGAGTCAACTTTTGCAAA
TTTTGTTTGGTTTGTCATTTTGTCTTTTATAAGTGTCCAAATAACTTTGGATTTGGTTGTTGTTTGAATTGTTTTTGACCTATTATTCTA
TGCAAGGTAAGGCTTTTAGTTGAAAAAAAAAAAAAAAAAAAAAAAC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (6)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS01	leave	6599	1
Capsicum annuum	KS07	Flower bud	4235	6
Capsicum annuum	KS09	Young fruit (0.5-2 cm)	4055	1
Capsicum annuum	KS10	Hairy root	2179	2
Capsicum annuum	KS11	Early root	2168	3
Capsicum annuum	KS12	Placenta	4279	1

mRNA member sequences (14)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	24	DEAD	331
2	21985	Helicase_C DEAD	273
5	56354	Helicase_C Cas3_core DEAD	62
1.1	101393	DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	340
2	118423	Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	248
5	129042	Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	54

Preceding Unigenes (0)

None

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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