Sol Genomics Network

Unigene SGN-U197982

Unigene Basic Information

Unigene ID:	SGN-U197982
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	197982
mRNA sequence:	Length: 1146 bp

>SGN-U197982 Capsicum annuum #1 (2 members)
CGGCCGCTGGCACTCCAGGTGTTCGCTGACTTTGACGTTTATGGCCGGGCTCTTGGGCTCACGTCATGCTGTTTGTATGGGAATTCCCCC
ATGGGAGCACAACAGGTTCAACTAAAAAGAGGAGTTGATATTGTAGTGGGTACTCCTGGAAGAATTAAGGACCACATTGAAAGAGGAAAT
ATTGATTTGAAGTTTTTACAGTTCCGTGTTCTTGACGAAGTCGATGAAATGTTAAAAATTGGTTTTGTAGATGATGTCGAATTTATTTTA
GGCAAGGTTGAAGATGCAAGCCGAGTTCAAACAGTTCTTTTCAGTGCCACTTTGCCAGACTGGGTTAAGCATATTGCTGCTAAGTTTCTG
AAACCAGATAAGAAAATTGCTGACCTTGTTGGTAATGAGAAAATGAAGGCCAGTAAAAATGTGAGGCATATTATTATTCCATGCTCTAGT
TCTGCAAGACCTCAGCTGATTCCTGATATCATTCGGTGCTACAGCAGTGGAGGCCGCACAATTATTTTTACCGAGACAAGGGCTTTAGCT
TCAGAGCTAGCTGGCTTGTTGCCTGGGGCAAGTGCTTTGCATGGGGAGATACAGCAAAACCAGCGTGAGGCTACACTTAAAGGATTCAGA
TCAGGAAAATTCATGACATTAGTGGCCACAAATGTGGCAGCCCGTGGATTGGATATTGATGATGTTCAGTTAATAATCCAGTGTGAAGCC
ACGAGTGATGTTGAAGCATACATTCATCGATCTGGAAGAACTGGAAGGGCAGGGAAGACTGGTGTTGCTGTAATGCTGTATGATCCAAGG
AAGTCCAACATTTCTAGAATTGAAAGAGAATCTGGTGTGCAGTTTGAGCATTTATCTGCTCCTCAGCCAGCTGATGTTGCTAAAGCGGCT
GGGAAAGAAGCTGCTGATATAATTGCGGATATTTCCGATAGTGTCATACCCGCATTTAAGGCTGCTGCAGAGGAGCTTCTGAATACGTCT
GACCTATCACCAGCAGAGTTGCTTGCAAAAGCTCTTGCCAAGGCTGCTGGCTATTCAGAGATCAAGACTCGGTCGCTTCTTACTTCTATG
GAGAACTGTGTTACACTGCTTCTTGAGTGTGGGGAGACCCATCTTCTCACCTTCCTTTGTCTATAG

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
AY500235	RNA helicase PRH75	RNA helicase

Genomic locations (0)

None

Library representation (2)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS01	leave	6599	1
Capsicum annuum	KS08	Anther	2304	1

mRNA member sequences (2)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	24	DEAD	331
2	21985	Helicase_C DEAD	273
5	57686	ATP_RecQ DEAD_box Helicase_C Cas3_core DEAD RecQ Aldehyde_dehydr	11
1.1	101393	DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	340
2	118423	Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	248
5	130340	ATP-dependent helicase DEAD-box - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026) Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) GUCT - Molecular Function: RNA binding (GO:0003723) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: nucleus (GO:0005634) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	11

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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