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Unigene SGN-U204178

Unigene Basic Information

Unigene ID:	SGN-U204178
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	204178
mRNA sequence:	Length: 396 bp

>SGN-U204178 Capsicum annuum #1 (1 members)
CCTCGTGCCGCCTCGTGCCGAAAAGGTGCATGTTCTCTTCTTCAAATTAAAACCAACCTATTCCTTCCTATTCTATTTGCATATCGCATT
TGTTCTTGAATCTCTTTGGCATAGTATTCGCGATTAAGAAGCAATAACAGCTCAGAGAGAAAGAAATTAAAAAGAGAGAATGTTCCATGC
TAAGAAACCTTCGACTATGAATTCCCATGACAGACCCATGTGTGTTCAAGGAGACTCAGGTCTTGTCCTCACCACTGATCCTAAACCTCG
TCTTCGTTGGACCGTTGAGCTTCACGAGCGTTCTGTTGATGCTGTTACTCAGTTAGGTGGACCTGATAAGGCAACCCCCAAAACTATTAT
GAGAGTTATGGGTGTTAAGGGTTTAACCCTTTACCA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS12	Placenta	4279	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E513752
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|30699418\|ref\|NP_849905.1\|	137.9	2.8e-32	88.31	225 bp (56.8%)	2
Description:	APL (ALTERED PHLOEM DEVELOPMENT); transcription factor/ transcription regulator [Arabidopsis th…
arabidopsis	blastx	At1g79430.2	137.9	1.4e-33	88.31	225 bp (56.8%)	2
Description:	At1g79430.2 68408.m08495 transfactor -related similar to transfactor GI:4519671 from [Nicotiana…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P38589 (76 Aa)

MFHAKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERSVDAVTQLGGPDKATPKTIMRVMGVKGLTLYX

SignalP predicts non-secretion with a score of 0.032

IPR006447 Myb-like DNA-binding region, SHAQKYF class

Prediction based on longest six frame method

>SGN-P158300 (78 Aa)

KERMFHAKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERSVDAVTQLGGPDKATPKTIMRVMGVKGLTLY

SignalP predicts non-secretion with a score of 0.028

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	26	Myb_SHAQKYF	311
2	22041	Myb_SHAQKYF	103
5	56557	Myb_DNA_binding Myb_SHAQKYF	32
1.1	101374	Homeodomain-like	561
2	118542	Homeodomain-like	58
5	129172	Myb-like DNA-binding region SHAQKYF class Myb DNA-binding - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) Homeodomain-like	34

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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