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Unigene SGN-U204962

Unigene Basic Information

Unigene ID:	SGN-U204962
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	204962
mRNA sequence:	Length: 424 bp

>SGN-U204962 Capsicum annuum #1 (1 members)
ATCAAGGCCTCCAGTGCTGGAGGGAGAGGCTACTGCTCGAGCGATTCATTTGGCTAGCTTTGTGAACACTCCATTGTATGTTGTTCATGT
CATGAGCATTGATGCAATGGATGAAATTGCCAGAGCTCGGAAGTCAGGTCAAAGAGTTGTTGGGGAGCCAGTAGTTTCAGGTTCACTTCT
TAATGATTCAGTACTTTGGGACCCTGACTTCCATTTTGCAGCAAGGTATGTCATGAGCCCACCAATCAGAGCAGCAGGTCATGGAACAGC
TCTTCAAGCAGCTCTTGCGATGGGGGTTCTGCAGCTGGTAGGAACTGATCACTGTACCTTCAACTCAACTCAGAAAGCCCTAGGAATTGG
TGATTTCCGGAAAATACCAAATGGTGTTAATGGTATGGAGGAGCAGGATGCATCTGGTTTGGGA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS12	Placenta	4279	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E510147
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At5g12200 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|9759387\|dbj\|BAB10038.1\|	225.7	9.8e-59	79.26	405 bp (95.5%)	2
Description:	gi\|9759387\|dbj\|BAB10038.1\| dihydropyrimidinase [Arabidopsis thaliana] gi\|28194047\|gb\|AAO33381.1…
arabidopsis	blastx	At5g12200.1	172.6	6.2e-44	76.19	315 bp (74.3%)	2
Description:	At5g12200.1 68412.m01324 dihydropyrimidinase
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P39353 (141 Aa)

SRPPVLEGEATARAIHLASFVNTPLYVVHVMSIDAMDEIARARKSGQRVVGEPVVSGSLLNDSVLWDPDFHFAARYVMSPPIRAAGHGTA
LQAALAMGVLQLVGTDHCTFNSTQKALGIGDFRKIPNGVNGMEEQDASGLG

SignalP predicts non-secretion with a score of 0.14

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P159097 (141 Aa)

SRPPVLEGEATARAIHLASFVNTPLYVVHVMSIDAMDEIARARKSGQRVVGEPVVSGSLLNDSVLWDPDFHFAARYVMSPPIRAAGHGTA
LQAALAMGVLQLVGTDHCTFNSTQKALGIGDFRKIPNGVNGMEEQDASGLG

SignalP predicts non-secretion with a score of 0.14

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1360	Amidohydro_1 Pept_M38_regn Pept_M38_DHOmult	14
2	25594	Amidohydro_1 Pept_M38_regn NagA Pept_M38_DHOmult	6
5	61108	Amidohydro_1 Pept_M38_regn NagA Pept_M38_DHOmult	4
1.1	102544	Amidohydrolase 1 - Molecular Function: hydrolase activity (GO:0016787) Metallo-dependent hydrolase composite	13
2	122663	D-hydantoinase Amidohydrolase 1 - Molecular Function: hydrolase activity (GO:0016787) Metallo-dependent hydrolase composite Dihydroorotase region	5
5	133947	D-hydantoinase Amidohydrolase 1 - Molecular Function: hydrolase activity (GO:0016787) Metallo-dependent hydrolase composite Dihydroorotase region	4

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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