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Unigene SGN-U206974

Unigene Basic Information

Unigene ID:	SGN-U206974
Unigene Build:	Solanum melongena #2
Date:	2004-01-12
Organism:	S.melongena
Alternative ID:	206974
mRNA sequence:	Length: 443 bp

>SGN-U206974 Solanum melongena #2 (1 members)
TTTTTTTTTTTTTTTTTGTAAAATGGTTATTAACAATTGATATGACTAAATGTTCAGGGACAATGACATGTAGCTGGGCAGAGCATGAAG
GTACGAGGGTACAAACAGATTGCTGTCTGTTTCTTTACACCCACTGTCACACACACACACACATACATCCACAGGAAAAAATAAGGGAGG
GAAAAGGAACAAACAAATCACTCTGCGAAATAAATTAGCTACACATATTTGGGATGCACACTCCACCTTCTGGATTTTGTTGTTCTTTCC
ATATCCGTCCAGTAACTCGAAGTTTCAGCTCCTTTCGATCCCCTCCAGAAAAGAAAAGTGCCATGTTACGTTGGATTATTAGACCATCAT
GACTGTCCCTAACTTTGCGGTGGCTATCTCGAACACTTCTTGGTGTTCCTTCCCATATAAGCTTTCTACCATTTGCTCCTACT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum melongena	cSML	buds & flowers anthesis-stage flowers, 4-8 week old plants	4031	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E520121
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|7489765\|pir\|\|T01657	145.6	1.2e-34	91.67	216 bp (48.8%)	-2
Description:	gi\|7489765\|pir\|\|T01657 hypothetical protein 28L9 - maize (fragment) gi\|3264611\|gb\|AAC24576.1\| s…
arabidopsis	blastx	At5g53360.1	142.9	5.8e-35	88	225 bp (50.8%)	-2
Description:	At5g53360.1 68412.m05995 seven in absentia (sina) protein family low similarity to siah-1A prot…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P209425 (87 Aa)

RYEGTNRLLSVSLHPLSHTHTHTSTGKNKGGKRNKQITLRNKLATHIWDAHSTFWILLFFPYPSSNSKFQLLSIPSRKEKCHVTLDY

SignalP predicts non-secretion with a score of 0.116

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P30516 (75 Aa)

VGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPEGGVCIPNMCS

SignalP predicts non-secretion with a score of 0.071

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	339	Sina	48
2	22313	Sina	35
5	56517	Sina	34
1.1	101674	TRAF-like Seven in absentia protein - Cellular Component: nucleus (GO:0005634) - Biological Process: ubiquitin-dependent protein catabolism (GO:0006511) - Biological Process: development (GO:0007275) SIAH-type	48
2	118717	TRAF-like Seven in absentia protein - Cellular Component: nucleus (GO:0005634) - Biological Process: ubiquitin-dependent protein catabolism (GO:0006511) - Biological Process: development (GO:0007275) SIAH-type TRAF-type	34
5	129183	TRAF-like Seven in absentia protein - Cellular Component: nucleus (GO:0005634) - Biological Process: ubiquitin-dependent protein catabolism (GO:0006511) - Biological Process: development (GO:0007275) SIAH-type TRAF-type	33

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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