Sol Genomics Network

Unigene SGN-U269042

Unigene Basic Information

Unigene ID:	SGN-U269042
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269042
mRNA sequence:	Length: 1341 bp

>SGN-U269042 Solanum tuberosum #4 (39 members)
AGAAAACCCTCAACTAAATGAGGTGTGCCTCCACTATGACTATCATTATTCTCTCCTGAAAAAGAAATTTCCATTAATTTTTCTTCATTC
AGGGTTTTTTTTCCAGCTATGGAGTTAGGTGACAACAAGATTCTGAATGTGGGGTTGCTGTTAGTTGCTACCCTTTTGGTAGCAAAGCTC
ATATCTGCACTAATTATGCCCAGATCTAAGAAGCGTTTGCCTCCAGTGATTAAGGCATGGCCTATTGTTGGTGGGTTGATTCGTTTCCTT
AAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAAAATCACATTCTTC
ATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTT
GGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTTACTAAGTTGAAG
GGCTATGTAGATCAGATGGTTACAGAAGCTGAGGAGTACTTCTCAAAATGGGGTGAGAGTGGTGAAGTAGATCTAAAGTATGAACTGGAG
CATCTTATCATATTGACAGCTAGTAGATGTCTGTTGGGAGAAGAGGTCCGCAATAAACTCTTTGACGATGTGTCTGCTCTCTTCCATGAC
CTAGACAATGGGATGCTCCCTATCAGTGTTATCTTTCCCTACCTTCCAATTCCAGCCCATCGCCGACGTGACAATGCCCGGAAGAAGCTC
GCGGAGATCTTTGCAAACATCATAAATTCTAGAAAACGTACAGGCAAGGCAGAGAATGATATGTTACAATGCTTCATTGACTCGAAGTAC
AAAGATGGACGGCCAACAACAGAGGGTGAGATCACAGGTCTTCTGATTGCTGCTCTTTTCGCTGGGCAGCACACCAGTTCCATCACTTCC
ACTTGGACAGGGTCATACCTCCTCACCAACAACAAGTACATGTCTGCTGTTGTAGATGAACAGAAGAATTTGATGAAGAAACACGGGAAT
AAGGTTGATCACGACATCCTTTCCGAGATGGATGTCCTCTACAGATGCATAAAGGAAGCCCTGAGACTCCATCCTCCACTGATAATGCTT
CTGCGTAGTTCACATAGCGATTTCAGTGTTACAACCAGAGAAGGAAAAGAGTACGACATTCCTAAGGGACATATCGTTGCAACATCTACT
TCTTTTGGTGCAAACAGGCATGGCTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (16)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	IVROOT	Root	5850	2
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	STM	mixed tissues	14805	3
Solanum tuberosum	STOL	Stolon	6462	2
Solanum tuberosum	SWST	Stolon	5942	3
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	3
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	8
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	2
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	2
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	5
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	3

mRNA member sequences (39)

Alignment image suppressed for unigene with 39 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	4	Cytochrome_P450	973
2	25013	Cytochrome_P450 EP450IV	7
5	59025	Cytochrome_P450 EP450IV	7
1.1	101365	Cytochrome P450 - Molecular Function: monooxygenase activity (GO:0004497) - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037)	908
2	120286	Cytochrome P450 - Molecular Function: monooxygenase activity (GO:0004497) - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037) E-class P450 group IV - Molecular Function: monooxygenase activity (GO:0004497) - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037)	9
5	130572	Cytochrome P450 - Molecular Function: monooxygenase activity (GO:0004497) - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037) E-class P450 group IV - Molecular Function: monooxygenase activity (GO:0004497) - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037)	9

Preceding Unigenes (1)

Unigene	Build
SGN-U243790	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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