Sol Genomics Network

Unigene SGN-U269586

Unigene Basic Information

Unigene ID:	SGN-U269586
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269586
mRNA sequence:	Length: 2501 bp

>SGN-U269586 Solanum tuberosum #4 (32 members)
GTTTCTTGAAAACCTTATCTCTTCAACACTCCCTCTAATTCTTCCTTCCTTCCTATCCATAAACCCTAGCAAAAACATGGCTTTTCTCCC
TTGTCCATTGAGATATAGCAAAATGAACAGTCTTTTTCTACTGAGAAAGTCTTCATCTTCACTAACATCAAAAAGGGTGTCCATTAATTC
CATTTCCCATATCTTCAGTGACAAATTTAGTCCCAGAAATGCCCTCCCAGTACCTCAAGTTCACAGCTTTACCACTTCTTTAACCATATC
AGCACCACCAATGAACTGGGTTGATGGTAAATTTGGGTATAGTGTTAAGGGGTTTCATGGGGGTGGTTGTTGTTTGCAGGCAGCGACGGC
GACGGCAATGGCGATGGTGGATTTAGAAGAGGATTGTGAAGAAGGGCTTGAGATTTCGAAACTTGGGATTTCTGAGGAAATTGTTTCTGC
TTTGGCACAAAGGGGAATTACTAGCCTTTTTCCAATTCAGAGAGCTGTTTTGGAACCAGCAATGCAGGGGTCAGACATGATTGGCCGAGC
TAGAACTGGAACTGGAAAGACGCTAGCTTTTGGCATTCCTATCATGGATAAGATCATTCGCTTCAACAGGAAAAAGGGACGGGGAAGAAA
CCCTTTAGCATTGATCTTGGCTCCCACTAGAGAACTTGCACGCCAGGTGGACAAGGAATTTTATGAGTCTGCTCCTGTTTTGGATACGCT
GTGTGTTTATGGTGGGGTACCCATTTCACGCCAAATGAGTACTCTTGACAGGGGAACAGACATTGTTGTTGGGACACCTGGTCGTATCAT
TGATTTGCTGAAGAGAGGGTCATTAAATTTGTCAGATATCCAGTTTGTTGTTCTAGATGAAGCTGATCAGATGCTTAATGTGGGATTCGC
AGAGGATGTTGAAACCATTCTAGAAAATATTAGGCAGAAACATCAGACAATGATGTTTTCAGCCACGATGCCAAGTTGGATATTGAAACT
TACCAAGAAGTTCTTGAAGAAACCAATTCACGTTGATCTTGTAGGAGATTCTGACCAGAAATTAGCTGATGGCATTTCTTTGTATTCAAT
TGCTTGTGAGATGCGTCAGAAACCAGCAGTTCTTGGACCCTTAATATCGGAGCATGCAAAAGGAGGCAAGTGTATTGTCTTCACTCAAAC
AAAGCGTGATGCTGATAGGCTGGCGGGTGCAATGCAAAGAACTTTGAGGTGTGAAGCTTTGCATGGAGATATCTCACAAAGCCAGAGGGA
GAGAACTCTATCTGGTTTCCGACAAGGTCAATTTAATGTATTGGTGGCCACCGATGTTGCTGCCCGAGGACTTGATGTACCTAATGTTGA
TCTGGTGATACATTACGAACTTCCGAACAATTCAGAGATCTTTGTTCATCGATCTGGTCGAACTGGACGTGCTGGTAAGAAAGGAAGTGC
CATTCTCATGCATTCCTCAAAACAGCATAGGGATGTAAAAGGTATTGAACATGATGCCGGATGCAGATTTACTGAGCTCCCAACAATTAA
AGTAGAGGCTGGAGCAGCAGAAATGTATAGTGAAATGGGAAAAGATGTTGGCCGCTTTGGCTCCTATGGAGGAGGCACCATGCGTAGTCG
ATCTAGTGATTTTGGTGGAGGTCGTTCTGGTGGCTATGGAGGTGGAGGTCGTTCTGGTGGCTATGGAGATAAGAGCAGCAAGTTTGGTCG
AGAAGGCTCTTCATCTTCTGTTCGAACAGGTGGATACGGCGCAACTGGTTCAGGAAGATCAAGAGGTGGCTTTAGTGGACCTAGCTCGGG
CCGCTCAGGAAAGTTTGGTGGTGGTTCAGGAGACACACGAGGCTCAAAACGTTTGGGTGGTTTCCGTAACTTTGGTGATTTTGGAAGCTC
CAAAAGTTCAGATCGGTCGACTAATTTTGCAGAAGAGTTTGGTTCAGGCCGTTCTAGAAGATTTGGAGATTTGGATTATGACCGAAACAA
CCGTTCAAGCCGTTTTGATGTCTTCGGAGATGACAAGGATAGTGGTGAATGGTGATCAGAGTTGGGGGAGGAACTATTTCTAACTCTGTT
GCAAGGAGGCGTGGCCACTCAATAGATGACGGTGAAGATGAAACTCCGATATGTGAAGTATGTGTGTTGATTACCAGGTGCTGTAGAGTA
GCAGCAGCTGCAGATGGTGATGCTACAACTCGTTACAGTAGAAAATAACACTTCAACATTCACTTGATCTCGAAAGGTACCTACATGCTA
TATGTAACCGATAGCTTACCAAGTTCTCACCATTGCTGGCGTTATGTTTCTTCGCTTTATGTTTATATTCTTTGATCTCAAGCTTGAAAT
GAATATTTTTTGCAAGAGATCATGTTGGTACTTGCTAGTAGTAGTGGTTGTAATGTTCAGTATAAATTTTGGACAAACCTTGACCCCTTA
TTATTAGGATGTATTGAATTGTTGAATCAACAGGTGAAAAGGCTTACAGTGGAAAAAAAAAAAAAAAAAAC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (14)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	2
Solanum tuberosum	STM	mixed tissues	14805	4
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	5
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	8
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	4
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (32)

Alignment image suppressed for unigene with 32 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	24	DEAD	331
2	21985	Helicase_C DEAD	273
5	58290		9
1.1	101393	DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	340
2	118423	Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	248
5	131107		8

Preceding Unigenes (1)

Unigene	Build
SGN-U244143	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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