Sol Genomics Network

Unigene SGN-U271261

Unigene Basic Information

Unigene ID:	SGN-U271261
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	271261
mRNA sequence:	Length: 2451 bp

>SGN-U271261 Solanum tuberosum #4 (15 members)
GGAGCTCTTCTCGATAATCGCCTAATTTCTATAAATTAAAATCAGTATATCATCGAAGAACACAACGAAAATCCGATGGGCACAAGCAAA
ACGACAGTTCAAATTCATGAAAATGATAAAACGAAGTTACATGGAGTAGTAGTTCAGTGAAGTAGTAGAAACTGAGATCGCATTCTCCAT
CTCCATTTTTCACATCTAAACAGTCGTGCAAAAAAATGAAAATTTGCTGCGAGACAGGTATGTGTCGCAGCAGGAAATAGCATCTTAAAG
GAAGGAAGGAAACTCGAAGTTGCTGAAATTTTTTGGTAATAAGATTCTTTGGACGAAACGAGGTAATGGAATCCTGTGATTGCATTGAGG
CTTTACTGCCAACTGGTGACCTGCTGGTTAAATACCAATACCTCTCAGATTTCTTCATTGCTGTAGCCTACTTTTCCATTCCATTGGAGC
TTATTTATTTTGTCCACAAATCTGCATGCTTCCCATACAGATGGGTTCTCATGCAATTTGGCGCTTTTATTGTTCTCTGTGGAGCAACAC
ACTTTATTAGCTTGTGGACATTCTTTATGCACTCTAAGACGGTTGCTGTGGTTATGACCATATCAAAAATGTTAACAGCTGCTGTGTCCT
GTATCACAGCTTTGATGCTTGTTCACATTATTCCTGATTTGCTAAGTGTTAAAACACGAGAGTTGTTCTTGAAAACTCGAGCTGAAGAGC
TTGACAAGGAAATGGGCCTAATAATAAGACAAGAAGAAACTGGCAGACATGTCAGGATGCTGACTCATGAGATAAGAAGCACCCTCGACA
GACACACAATCTTGAAGACTACTCTTGTGGAGCTAGGTAGTACCTTAGACCTGGCAGAATGTGCTTTGTGGATGCCATGCCAAGGAGGCC
TGACTTTGCAACTTTCCCATAATTTGAACAATCTAATACCTCTGGGATCTACTGTACCAATTAATCTTCCTATTATCAATGAGATTTTTA
GTAGCCCTGAAGCAATACAGATTCCACATACGAATCCTTTGGCAAGGATGAGGAATACTGTTGGTAGATATATTCCACCAGAAGTAGTTG
CTGTTCGTGTACCTCTTTTACACCTCTCAAGTTTTACTAATGACTGGGCTGAATTGTCTACTAGAAGTTATGCGGTGATGGTTCTGGTTC
TCCCAATGAATGGCTTAAGAAAGTGGCGTGAACATGAGTTAGAACTTGTGCAAGTTGTCGCAGATCAAGTTGCTGTCGCGCTTTCACATG
CTGCAATTTTAGAAGATTCCATGCGAGCCCATGATCAGCTCATGGAACAGAATATTGCTTTGGATGATGCTCGACAAGAAGCAGAGATGG
CCATCCGTGCACGTAACGACTTCCTTGCTGTAATGAACCATGAAATGAGAACGCCTATGCATGCAGTTATTGCTCTGTGCTCTCTGCTTT
TAGAAACAGACTTAACTCCAGAGCAGAGGGTTATGATCGAGACCATATTGAAGAGTAGCAATCTTCTTGCAACACTGATTAATGATGTTC
TAGATCTTTCTAGACTTGAAGATGGTATTCTTGAACTCGAAAATGGAACATTCAATCTTCATGGAATCTTAAGAGAGGCCGTTAATTTGA
TAAAGCCAATTGCATCTTTGAAGAAATTATCTATAACTCTTGCTTTGGCTCTGGATTTACCTATTCTTGCTGTGGGTGATGCAAAACGTC
TTATCCAAATTCTCTTAAATGTGGCGGGAAATGCTGTGAAGTTCACTAAAGAGGGTCATATCTCAATCGAGGCTTCAGTTGCCAAACCAG
AGTATGCGAGAGATTGTCATCCTCCTGAAATGTTCCCTATGCCAAGTGATGGCCAGTTTTATTTGCGCGTCCAGGTTAGAGATACTGGGT
GTGGCATTAGTCCACAAGATATACCGCTAGTATTCACCAAATTTGCAGAGGCACGACCTACGTCAAATCGAAGTACTGGAGGGGAAGGTC
TGGGGCTCGCCATTTGCAGACGATTTATTCAACTTATGAAAGGTAACATTTGGATTGAAAGTGAGGGCTCTGGAAAGGGAACCACTGTCA
CGTTTGTAGTGAAACTCGGAATCTGCAACCATCCAAATGCATTGCCTCTGCTACCTGTGCCTCCCAGAGGTAGGTTGAACAAAGGTAGCG
ATGATCTGTTCAGGTATAGACAGTTCCGTGGAGATGATGGTGGGATATCTGTGAACGCTCAACGCTATCAAAGAAGTCTGTAAATGACAA
AGTGACTAGTGAATTTGAGATTTCTTCACTGTTTTGTTCGTTCCAATGACAGTTTCTTGTAACTAACTTAATTCAATGCTCGTAAAGAGA
GTATTGAGAATTCCAGCATCGTGAAAATGTAACTATCGAATTTATACATCGAGCTTCAGACAACAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (2)

Locus symbol	Locus name	Gene activity
ers	ethylene receptor (ERS) gene
AF051938	AF051938 ethylene receptor	ethylene receptor

Genomic locations (0)

None

Library representation (9)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXFL	Floral buds	6603	2
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	2
Solanum tuberosum	STM	mixed tissues	14805	4
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (15)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 8 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	26	Myb_SHAQKYF	311
2	22238	GAF His_kinA_N	41
5	56952	GAF Metal_his_kin His_kinase His_kinA_N ATPbind_ATPase Bact_sens_pr_C	19
1.1	101374	Homeodomain-like	561
2	118740	GAF Histidine kinase A N-terminal - Molecular Function: two-component sensor activity (GO:0000155) - Biological Process: signal transduction (GO:0007165) - Cellular Component: membrane (GO:0016020)	32
5	129816	GAF Histidine kinase A N-terminal - Molecular Function: two-component sensor activity (GO:0000155) - Biological Process: signal transduction (GO:0007165) - Cellular Component: membrane (GO:0016020) ATP-binding region ATPase-like - Molecular Function: ATP binding (GO:0005524) Histidine kinase related protein C-terminal - Biological Process: phosphorylation (GO:0016310) - Molecular Function: transferase activity transferring phosphorus-containing groups (GO:0016772) Histidine kinase homodimeric Histidine kinase - Biological Process: protein amino acid phosphorylation (GO:0006468) - Molecular Function: kinase activity (GO:0016301)	15

Preceding Unigenes (2)

Unigene	Build
SGN-U246764	Solanum tuberosum #3
SGN-U249980	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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