Sol Genomics Network

Unigene SGN-U274323

Unigene Basic Information

Unigene ID:	SGN-U274323
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	274323
mRNA sequence:	Length: 3767 bp

>SGN-U274323 Solanum tuberosum #4 (7 members)
CGAAGTTGTGGTTCCATTTTTTTGGGGAATTTCAGACGAGGAATAGCTGATGAGCACCAGTTTATTTGCTTCAGATTCAGACCAACTATA
ACAACAATTCACCTGAAACCTACTACTTTGTTGTTGCCTCTCAAAGCTTCTGAAAGATTTGAGTCAAAATGTCGTCTTCAAGACCTAGCC
AATCTTCCACCACTTCATCAAGATCAAAGCACAGTGCTAGGATCATTGCACAGACCTCTATTGATGCAAAGTTGCATGCAGACTTTGAGG
AGTCAGGTGATTCCTTTGACTATTCAAGCTCGGTGAGGGTTACAAATGTAGCTGAGGGTGAGCAAAGGCCAAAGTCAGACAAAGTTACCA
CCGCTTACCTTCATCAGATCCAAAAGGGCAAGTTTATCCAGCCATTTGGTTGTCTGTTAGCCCTGGATGAGAAAACATTAAAGGTCATAG
CATTCAGTGAAAATGCCCCTGAAATGCTGACCATGGTTAGCCATGCTGTTCCAAGTGTTGGTGAGCATCCAGTTCTTGGGATCGGGATTG
ATATCAGAACGATCTTCACTGGTCCTAGTGGCGCAGCATTGCAGAAAGCCTTGGGGTTTGGGGAAGTTTCTCTGTTAAATCCTGTCCTTG
TTCACTGCAAAAATTCTGGGAAGCCATTTTATGCAATTGTTCATAGGGTTACAGGTAGCTTAATCATTGATTTTGAGCCTGTGAAGCCCT
ATGAAGTTCCCATGACTGCTGCAGGGGCCCTGCAGTCATATAAACTTGCAGCCAAAGCCATTACTCGCTTGCAGTCCTTGCCCAGTGGCA
GTATGGAAAGACTTTGTGACACAATGGTTCAGGAGGTTTTTGAACTCACAGGTTATGACAGGGTGATGGGATATAAGTTTCACGATGATG
ATCATGGAGAGGTGGTGTCTGAGATCACAAAGCCTGGCCTCGAGCCTTACCTTGGTTTACATTATCCTGCTACGGATATTCCACAGGCTG
CACGGTTTTTGTTTATGAAGAATAAGGTCCGAATGATTTGTGATTGCCGAGCAAAACATGTGAAGGTAGTCCAAGATGAGAAGCTTCCAT
TTGACTTAACATTGTGCGGCTCTACTCTTAGGGCCCCTCACTACTGCCATTTACAGTATATGGAGAACATGAATTCAATTGCATCACTTG
TAATGGCAGTTGTGGTCAATGACGGGGATGAAGAAGGAGAAAGCTCTGATTCTTCACAATCTCAAAAAAGAAAAAGGCTATGGGGCTTGG
TTGTTTCCCACAACACGACCCCAAGGTTCGCGCCCTTCCCACTGAGGTATGCATGTGAGTTTCTTGCACAAGTCTTTGCCATACTCGTTA
ACAAGGAACTGGAATTGGAAAATCAATTCCTTGAGAAAAATATTCTGCGTACTCAGACTCTCTTGTGTGATATGCTGATGCGAGATGCTC
CCCTAGGTATCGTGTCACAGAGCCCCAACATTATGGATCTCATCAAATGTGATGGTGCTGCTTTGCTCTATAAGAATAAGATACATCGAT
TAGGAATGAACCCAAGTGACTTTCAGCTGCATGATATAGTATCATGGCTTTGTGAGTATCATACAGATTCCACAGGCTTGAGTACGGATA
GCTTGTATGATGCTGGGTTTCCTGGGGCTCTTGCTCTTGGTGATGCAGTCTGTGGTATGGCGGCTGTAAGAATATCTGATAAGGACTGGC
TGTTCTGGTACAGGTCACACACTGCTGCTGAAGTTAGATGGGGTGGTGCAAAGCATGAACCTGGTGAGAAGGATGATGGCAGGAAAATGC
ATCCTAGGTCATCGTTCAAAGGATTCCTGGAAGTTGTCAAGACAAGGAGTATACCCTGGAAGGACTATGAGATGGATCGAATCCACTCCT
TGCAGCTCATACTAAGAAATGCTTTCAAGGATGCTGATGCTGTGAATTCAAATACAATTTCCATCCATACGAAGCTTAATGATCTAAAGA
TTGATGGAATGCAGGAACTTGAAGCAGTGACAGCTGAAATGGTCCGCTTAATTGAAACAGCTTCAGTTCCTATATTCGCAGTTGATGTTG
ATGGGCAGGTTAATGGATGGAACACTAAAGTTGCTGAATTAACTGGTCTTCCTGTTGATGAAGCAATTGGGAAACATCTGCTCACTCTCG
TGGAGGATTCATCAGTTGATACCGTGAATAAGATGTTGGAATTAGCATTGCAGGGGAAAGAGGAAAGAAATGTAGAGTTTGAAATAAAAA
CACATGGGCCGTCGAGGGATTCTAGTCCAATCAGCTTAATCGTGAATGCATGTGCAAGCAAAGATGTTCGGGATAGTGTTGTGGGTGTGT
GTTTTATTGCTCAGGATATAACTGGACAAAAAAGTATCATGGACAAGTTCACCCGAATCGAAGGTGACTATAGAGCGATTATCCAAAATC
CTCACCCATTGATCCCACCAATATTTGGCACTGATCAATTTGGCTGGTGTTCTGAATGGAACTCTGCGATGACCAAGTTAACTGGATGGC
GGCGTGATGATGTTATGGATAAAATGCTGCTAGGGGAGGTTTTTGGGACACAGGCAGCTTGCTGCCGTCTCAAGAATCAAGAAGCTTTTG
TGAATTTCGGAGTTATACTAAACAATGCTATCACTGGTCAAGAATCTGAGAAGATTCCTTTTGGTTTCTTTGCACGTTACGGGAAATATG
TGGAGTGCTTACTCTGTGTGAGCAAAAGGTTAGATAAAGAGGGTGCAGTCACGGGACTCTTTTGTTTCCTGCAGCTTGCAAGCCATGAGT
TGCAACAAGCTCTTCATGTTCAACGATTATCAGAACAAACTGCATTGAAAAGGTTGAAAGTATTAGCTTACATAAGGAGGCAAATTAGGA
ATCCTCTTTCTGGGATTATATTCTCTCGGAAGATGCTAGAGGGGACTAGCTTGGGCGAAGAGCAGAAAAATATACTGCATACAAGTGCAC
AGTGTCAGCGTCAGCTCGACAAAATTCTTGATGATACAGATCTTGATAGCATCATAGAGGGTTATTTGGATCTGGAGATGCTCGAGTTTA
AGCTACATGAGGTATTGGTAGCATCCATAAGTCAAGTCATGATGAAGAGCAATGGAAAGAATATAATGATCTCGAATGACATGGTTGAAG
ATCTTCTTAATGAAACTTTATATGGAGATAGTCCGAGACTTCAACAAGTCCTAGCTAACTTTTTGTTAGTATCTGTTAACTCTACACCAA
GTGGTGGCCAGCTTAGTATTTCAGGCAAGCTAACTAAAGATCGCATAGGAGAATCTGTTCAGCTTGCTCTCTTGGAATTCAGGATAAGAC
ATACAGGGGGTGGAGTGCCAGAAGAATTGCTTAGCCAAATGTTTGGTAGTGAAGCCGATGCATCTGAAGAAGGGATCAGCTTACTTGTCA
GCAGAAAACTGGTCAAGCTGATGAATGGGGAAGTTCAGTACCTAAGAGAGGCTGGGCGATCAACTTTCATTATATCCGTTGAACTCGCAG
TGGCTACCAAATCAAGCTGATGATTTCAGGACCCTCTTAAGGTCCTAAACTAATTCTGCAGGTCTGTATAATGGAGGAGGATTTCAAGTT
AAAAGTGTTTTATGATTTCCCCCGTGTTGTGCTCGTTCTTGTCATTTTCCCTCCTCTTTGTTACATTGTTTGCCTTTGGTTTTTGAAAGT
CACTTGAACAATTGCATTTTCAGCATTTCAACATTTCAGTTTCATTAGAAAAAAAAAAAAAAAAAAAAACTCGAGAC

[Blast] [AA Translation]

Associated Loci (2)

Locus symbol	Locus name	Gene activity
phyB	phytochrome B	phytochrome
phya	phytochrome A	phytochrome

Genomic locations (0)

None

Library representation (4)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	3
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	2
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (7)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 10 )

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P77294 (1185 Aa)

RSCGSIFLGNFRRGIADEHQFICFRFRPTITTIHLKPTTLLLPLKASERFESKCRLQDLANLPPLHQDXKHSARIIAQTSIDAKLHADFE
ESGDSFDYSSSVRVTNVAEGEQRPKSDKVTTAYLHQIQKGKFIQPFGCLLALDEKTLKVIAFSENAPEMLTMVSHAVPSVGEHPVLGIGI
DIRTIFTGPSGAALQKALGFGEVSLLNPVLVHCKNSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSG
SMERLCDTMVQEVFELTGYDRVMGYKFHDDDHGEVVSEITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKHVKVVQDEKLP
FDLTLWALLLGPLTTAIYSXMENMNSIASLVMAVVVNDGDEEGESSDSSQSQXKKKAMGLGCFPQHDPKVRALPTEDACEFLAQVFAILV
NKELELENQFLEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLIKCDGAALLYKNKIHRLGMNPSDFQLHDIVSWLCEYHTDSTGLSTD
SLYDAGFPGALALGDAVCGMAAVRISDKDWLFWYRSHTAAEVRWGGAKHEPGEKDDGRKMHPRSSFKGFLEVVKTRSIPWKDYEMDRIHS
LQLILRNAFKDADAVNSNTISIHTKLNDLKIDGMQELEAVTAEMVRLIETASVPIFAVDVDGQVNGWNTKVAELTGLPVDEAIGKHLLTL
VEDSSVDTVNKMLELALQGKEERNVEFEIKTHGPSRDSSPISLIVNACASKDVRDSVVGVCFIAQDITGQKSIMDKFTRIEGDYRAIIQN
PHPLIPPIFGTDQFGWCSEWNSAMTKLTGWRRDDVMDKMLLGEVFGTQAACCRLKNQEAFVNFGVILNNAITGQESEKIPFGFFARYGKY
VECLLCVSKRLDKEGAVTGLFCFLQLASHELQQALHVQRLSEQTALKRLKVLAYIRRQIRNPLSGIIFSRKMLEGTSLGEEQKNILHTSA
QCQRQLDKILDDTDLDSIIEGYLDLEMLEFKLHEVLVASISQVMMKSNGKNIMISNDMVEDLLNETLYGDSPRLQQVLANFLLVSVNSTP
SGGQLSISGKLTKDRIGESVQLALLEFRIRHTGGGVPEELLSQMFGSEADASEEGISLLVSRKLVKLMNGEVQYLREAGRSTFIIPLNSQ
WLPNQADDFRTLLRS

SignalP predicts non-secretion with a score of 0.137

IPR003661 Histidine kinase A, N-terminal
IPR005467 Histidine kinase
IPR003018 GAF
IPR001294 Phytochrome
IPR000700 PAS-associated, C-terminal
IPR000014 PAS
IPR003594 ATP-binding region, ATPase-like

Prediction based on longest six frame method

>SGN-P216203 (1125 Aa)

VKMSSSRPSQSSTTSSRSKHSARIIAQTSIDAKLHADFEESGDSFDYSSSVRVTNVAEGEQRPKSDKVTTAYLHQIQKGKFIQPFGCLLA
LDEKTLKVIAFSENAPEMLTMVSHAVPSVGEHPVLGIGIDIRTIFTGPSGAALQKALGFGEVSLLNPVLVHCKNSGKPFYAIVHRVTGSL
IIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMGYKFHDDDHGEVVSEITKPGLEPYLGLH
YPATDIPQAARFLFMKNKVRMICDCRAKHVKVVQDEKLPFDLTLCGSTLRAPHYCHLQYMENMNSIASLVMAVVVNDGDEEGESSDSSQS
QKRKRLWGLVVSHNTTPRFAPFPLRYACEFLAQVFAILVNKELELENQFLEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLIKCDGAA
LLYKNKIHRLGMNPSDFQLHDIVSWLCEYHTDSTGLSTDSLYDAGFPGALALGDAVCGMAAVRISDKDWLFWYRSHTAAEVRWGGAKHEP
GEKDDGRKMHPRSSFKGFLEVVKTRSIPWKDYEMDRIHSLQLILRNAFKDADAVNSNTISIHTKLNDLKIDGMQELEAVTAEMVRLIETA
SVPIFAVDVDGQVNGWNTKVAELTGLPVDEAIGKHLLTLVEDSSVDTVNKMLELALQGKEERNVEFEIKTHGPSRDSSPISLIVNACASK
DVRDSVVGVCFIAQDITGQKSIMDKFTRIEGDYRAIIQNPHPLIPPIFGTDQFGWCSEWNSAMTKLTGWRRDDVMDKMLLGEVFGTQAAC
CRLKNQEAFVNFGVILNNAITGQESEKIPFGFFARYGKYVECLLCVSKRLDKEGAVTGLFCFLQLASHELQQALHVQRLSEQTALKRLKV
LAYIRRQIRNPLSGIIFSRKMLEGTSLGEEQKNILHTSAQCQRQLDKILDDTDLDSIIEGYLDLEMLEFKLHEVLVASISQVMMKSNGKN
IMISNDMVEDLLNETLYGDSPRLQQVLANFLLVSVNSTPSGGQLSISGKLTKDRIGESVQLALLEFRIRHTGGGVPEELLSQMFGSEADA
SEEGISLLVSRKLVKLMNGEVQYLREAGRSTFIISVELAVATKSS

SignalP predicts non-secretion with a score of 0.031

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	26	Myb_SHAQKYF	311
2	22438	GAF His_kinase Phytochrome His_kinA_N PAS_domain ATPbind_ATPase	29
5	56753	GAF His_kinase Phytochrome His_kinA_N PAS_domain ATPbind_ATPase	24
1.1	101374	Homeodomain-like	561
2	118742	PAS fold Phytochrome chromophore binding site GAF PAS - Molecular Function: signal transducer activity (GO:0004871) - Biological Process: signal transduction (GO:0007165) ATP-binding region ATPase-like - Molecular Function: ATP binding (GO:0005524) PAS fold-2 Phytochrome central region Histidine kinase - Biological Process: protein amino acid phosphorylation (GO:0006468) - Molecular Function: kinase activity (GO:0016301) Phytochrome - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: G-protein coupled photoreceptor activity (GO:0008020) Phytochrome A/B/C/D/E - Biological Process: red far-red light phototransduction (GO:0009585) - Molecular Function: photoreceptor activity (GO:0009881) - Biological Process: protein-tetrapyrrole linkage (GO:0017006) - Molecular Function: protein homodimerization activity (GO:0042803) - Biological Process: regulation of transcription (GO:0045449)	32
5	129213	PAS fold Phytochrome chromophore binding site GAF PAS - Molecular Function: signal transducer activity (GO:0004871) - Biological Process: signal transduction (GO:0007165) ATP-binding region ATPase-like - Molecular Function: ATP binding (GO:0005524) PAS fold-2 Phytochrome central region Histidine kinase - Biological Process: protein amino acid phosphorylation (GO:0006468) - Molecular Function: kinase activity (GO:0016301) Phytochrome - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: G-protein coupled photoreceptor activity (GO:0008020) Phytochrome A/B/C/D/E - Biological Process: red far-red light phototransduction (GO:0009585) - Molecular Function: photoreceptor activity (GO:0009881) - Biological Process: protein-tetrapyrrole linkage (GO:0017006) - Molecular Function: protein homodimerization activity (GO:0042803) - Biological Process: regulation of transcription (GO:0045449)	30

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (2)

Unigene	Build
SGN-U249438	Solanum tuberosum #3
SGN-U263598	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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