Family Build
(I value*) | Family ID | Annotation** | # Members |
|---|
| 1.2 | 26 | Myb_SHAQKYF | 311 |
| 2 | 22438 | GAF
His_kinase
Phytochrome
His_kinA_N
PAS_domain
ATPbind_ATPase | 29 |
| 5 | 56753 | GAF
His_kinase
Phytochrome
His_kinA_N
PAS_domain
ATPbind_ATPase | 24 |
| 1.1 | 101374 | Homeodomain-like | 561 |
| 2 | 118742 | PAS fold
Phytochrome chromophore binding site
GAF
PAS
- Molecular Function: signal transducer activity (GO:0004871)
- Biological Process: signal transduction (GO:0007165)
ATP-binding region
ATPase-like
- Molecular Function: ATP binding (GO:0005524)
PAS fold-2
Phytochrome
central region
Histidine kinase
- Biological Process: protein amino acid phosphorylation (GO:0006468)
- Molecular Function: kinase activity (GO:0016301)
Phytochrome
- Biological Process: regulation of transcription
DNA-dependent (GO:0006355)
- Molecular Function: G-protein coupled photoreceptor activity (GO:0008020)
Phytochrome A/B/C/D/E
- Biological Process: red
far-red light phototransduction (GO:0009585)
- Molecular Function: photoreceptor activity (GO:0009881)
- Biological Process: protein-tetrapyrrole linkage (GO:0017006)
- Molecular Function: protein homodimerization activity (GO:0042803)
- Biological Process: regulation of transcription (GO:0045449) | 32 |
| 5 | 129213 | PAS fold
Phytochrome chromophore binding site
GAF
PAS
- Molecular Function: signal transducer activity (GO:0004871)
- Biological Process: signal transduction (GO:0007165)
ATP-binding region
ATPase-like
- Molecular Function: ATP binding (GO:0005524)
PAS fold-2
Phytochrome
central region
Histidine kinase
- Biological Process: protein amino acid phosphorylation (GO:0006468)
- Molecular Function: kinase activity (GO:0016301)
Phytochrome
- Biological Process: regulation of transcription
DNA-dependent (GO:0006355)
- Molecular Function: G-protein coupled photoreceptor activity (GO:0008020)
Phytochrome A/B/C/D/E
- Biological Process: red
far-red light phototransduction (GO:0009585)
- Molecular Function: photoreceptor activity (GO:0009881)
- Biological Process: protein-tetrapyrrole linkage (GO:0017006)
- Molecular Function: protein homodimerization activity (GO:0042803)
- Biological Process: regulation of transcription (GO:0045449) | 30 |
*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.
Library representation (1)
mRNA member sequences (1)
