Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U573215 in the current build, Tomato 200607 #2

Unigene SGN-U315663

Unigene Basic Information

Unigene ID:	SGN-U315663
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315663
mRNA sequence:	Length: 2002 bp

>SGN-U315663 Tomato 200607 #1 (37 members)
GAAATTGGCATTCTTTTTCTTGGCAACATATGGAGATGGTGAACCAACTGATAATGCTGCCAGATTCTATAAATGGTTTGAAGAGGGGAA
AGAGAGGGGTGACTGCTTTAAGAATCTTCAGTATGGAGTATTTGGGCTTGGCAACAGACAATACGAGCATTTTAACAAGATTGCTAAAGT
TGTCGATGAGCTTCTGGCTGAGCAAGGTGGGCAGAGGCTTGTTCCAGTGGGTCTTGGAGATGATGATCAATGCATTGAAGATGATTTTGC
TGCATGGCGTGAGTTAGTGTGGCCTGAATTAGATAAGTTGCTTCTTGACGGGGATGATGCAACTGCTACAACTCCATATACTGCTGCTGT
TTTGGAATATAGGGTTGTTACCTATGACAAGTCCAACTTTGATAACGACTTGACCAACACAAATGGTCATGCAAATGGACATGTCATCGT
TGATGCTCAACATCCTGTCAGAGCTAATGTTGCTGTGAGGAAGGAGCTTCATACTCCAGCTTCTGATCGTTCTTGCACTCATCTGGAGTT
TGACATTTCTTGCACTGGACTTACGTACGAAACTGGTGATCATGTTGGTGTGTACTGTGAAAATTTTGTTGAAACCGTGGAGGAAGCTGA
AAGGCTACTGAATATATCACCGGATACTTTCTTTTCCATTCACACCGATAAAGAGGATGGCACACCACTTGGTGGAAGTTCATTGCCATC
TCCATTCCCTCCTTGCACTTTGAGAACAGCATTGACTCGGTATGCTGATGTTTTGAGTTCTCCTAAAAAGTCTTCTTTACTTGCTTTAGC
GGCATGTTCTTCTGATCCAAATGAAGCTGATCGATTAAGATATCTAGCATCACCTGCTGGAAAGGAAGAATATGCTCAGTGGATAGTTGC
AAGTCAGAGAAGCCTTCTTGAAGTCATGGCTGAATTTCCTTCAGCCAAGCCTTCAATCGGTGTTTTCTTTGCTTCTGTTGCTCCTCGCCT
ACAACCAAGATTCTACTCCATCTCATCATCTCCTAGGATGGCGGCATCTAGAATTCATGTCACTTGTGCACTGGTTTACGACAAAATGCC
AACTGGACGAATTCACAAGGGTGTCTGCTCAACATGGATGAAGAATGCTATTCCTCTAGAAGAAAGCCTTTCCTGCAGTACGGCACCTAT
TTTTGTTCGGCAATCAAACTTTAAACTGCCAGCTGATAACAAGGTTCCAATCATAATGATTGGCCCTGGTACTGGATTGGCACCATTCAG
GGGTTTTCTCCAGGAAAGAATGGCTTTGAAGGAGGAAGGAGCTGACCTTGGTCCTGCAGTGTTATTTTTTGGATGCAGGAACCGCCAAAT
GGACTACATCTATCAGGATGAGTTAGATAACTTCCTTGAGGCCGGTGCACTTTCTAATCTAGTTGTTGCCTTCTCACGTGAAGGACCTAA
CAAAGAATATGTGCAACATAAAATGACACAGAAGGCGGACGACATCTGGAACATGATTTCTCAGGGAGGTTATGTTTATGTCTGTGGTGA
TGCTAAGGGCATGGCCAGGGATGTCCATCGGACCCTTCACACTATTGCTCAGGATCAGGGATCACTTGATAGCTCCAAGGCCGAGAGCTT
TGTGAAGAATTTGCAAACGACCGGAAGATATCTGCGTGATGTGTGGTAATTGTCTCATGGCAAGCCTATTGTGATTAGAGAAATATTTAG
GAAGGCGAGGACTTGCAAAGAACAATCAGCCTTCCAATAGGGTGGGTAAAACAAGTGTACGATTTGTCGTCACTGCTCTACTATTTGTAT
GATTCTTTTTTTACTTTTGGATAAAAGATTTTTTGGTTGATGTAGTTTATATATATCATTAATATATATGTACAACTGTGGGACAAATAA
TTATGCTAGTATTAATTTTAGGCAATATTTATTCAAGATCTTGTGCCTTGTAATTTCCCTAATGAACCAGCAATATGGTTCAGCCAACAT
TGTATGCTGACATTTTAAGGCC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (19)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	3
Solanum lycopersicum	LE12	Fruit 12 days post anthesis	276	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	12
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	2
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOS	suspension cultures	8026	1

mRNA member sequences (37)

Alignment image suppressed for unigene with 37 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 2 | blast: 2 | go: 7 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101624	Oxidoreductase FAD/NAD(P)-binding - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491) Flavoprotein pyridine nucleotide cytochrome reductase - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491)	56
2	119263	Oxidoreductase FAD/NAD(P)-binding - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491) Flavoprotein pyridine nucleotide cytochrome reductase - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491) Flavodoxin/nitric oxide synthase - Molecular Function: FMN binding (GO:0010181) - Molecular Function: oxidoreductase activity (GO:0016491) Flavodoxin-like - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) FAD-binding - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491)	18
5	130187	Oxidoreductase FAD/NAD(P)-binding - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491) Flavoprotein pyridine nucleotide cytochrome reductase - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491) Flavodoxin/nitric oxide synthase - Molecular Function: FMN binding (GO:0010181) - Molecular Function: oxidoreductase activity (GO:0016491) Flavodoxin-like - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) FAD-binding - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491)	12

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U214783	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: