Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U571933 and SGN-U593876 in the current build, Tomato 200607 #2

Unigene SGN-U315671

Unigene Basic Information

Unigene ID:	SGN-U315671
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315671
mRNA sequence:	Length: 2593 bp

>SGN-U315671 Tomato 200607 #1 (37 members)
CAAAACCCCCTTTTGATCCCAAAACCCCTTTTGCTCCAAAATATCTCTACAGCCTCTGCTTTCCAGAGCCAAAGTATCGGACCCCTCAAC
CGCCTTCCATATTTTGCTGGGTTAAGTCAGTTGCTTCTTTCGTCTTTTTCATAAACCCTTCTATACCATTTTGTTGATCTCTTCTCTGTT
GGCATATTTGAAGAATGAATAGTTTTGTTCTATTGAAGAAGTCTTCTTCTTTACATGCCTCGAAAAGGGTTGCTCTTAATGCCCTTACTC
ATCTATTCTTCTCGCCGTCGACGTCCGGCGAAGACAAGTTCATTTCGGGAAATACTCAATTCAACAGCTTTACCACTGTTAGTACGGCTA
ATACTTCGACAAATGGAAACTGGGTTGATAGGAAATTTGGGGTTTCTGTAAGAGGGTTTCATTCAGGTCGGTATTTACGAGCTGGATATG
CAGTGGCGAATTTACCTGAGGATGATGAAGGACTTGAGATATCAAAACTTGGTATATCTCAGGAGATCGTTTCTGCTTTGGAGAAAAAGG
GAATTACTAAGCTCTTTCCTATTCAGAGAGCTGTTCTGGAACCAGCAATGCAAGGATCTGACATGATAGGTCGAGCTAGAACTGGAACTG
GGAAGACACTAGCTTTTGGGATTCCCATCATGGATAAGATCATTCGCTTCAATGAGAAACATGGACGTGGAAGGAATCCTTTGGCTTTAA
TCTTGGCGCCTACCAGAGAACTTGCTAAACAAGTGGATAAAGAATTTTTTGAATCTGCTCCTGGTCTGGATACGCTGTGTGTTTATGGTG
GTGTTCCCATTTCACGCCAAATGAGTTCCCTGGACAGGGGAGTTGATGTTGTTGTGGGAACGCCAGGTCGGATTATTGATCTGCTGAAGA
GGGGTGCTTTGAATTTGGCAGAAATCCAGTTTGTTGTTCTAGATGAAGCTGATCAAATGCTTAATGTGGGTTTTGCGGAGGATGTCGAGA
CCATATTAGAAAATGTTCCGCAGAAGCACCAGACACTGATGTTTTCAGCCACAATGCCCAGTTGGATATTAAAAATTACCAACAAGTTCC
TGAAAAATCCAGTTCACATTGATCTTGTAGGAGATTCTGATCAGAAACTGGCTGATGGGATTTCCTTGTTTTCAATTGCTTGTGATATGC
ATCAGAAACCCGCAATTCTTGGACCTCTGATAACTGAGCATGCAAAAGGAGGCAAGTGCATTGTTTTTACTCAAACTAAACGTGATGCTG
ATAAATTGTCGTATGTAATGCAAAAGAGTTTCAACTGTGAAGCTTTGCACGGGGACATCTCACAAACCCAGAGGGAGAGAACTTTATCAG
GTTTTCGCCAAGGTCAATTCAATGTTTTGGTGGCTACTGATGTTGCTGCTCGAGGACTTGATGTACCTAATGTTGATCTGGTGGTACATT
ATGAGCTTCCAAACTCATCAGAGATCTTTGTTCATCGATCTGGTCGAACTGGGCGTGCTGGGAAGAAAGGAAGTGCAATTCTGATTCATT
CGTCAGGCCAACATAGGGATGTGAAAGGAATCGAACGTGATGTAGGATGCAGATTTATCGAGCTTCCAAGGATAGAAGTAGAGGCTGGAG
CAACAGACATGTTCAGTGACATGGGCAGAGGTGGGGGCCGCTTTGGCTCTTATGGAGGCATGGGAGGTGGTCGGTTTGGTGATTCTGGTT
CAGGTCGCTCTGGTGGCTATGGAAATTCTGGCGGCAGGTTTGGGGGGCAAGGCGGATATTCTGGTCGAACAGGTGGATTTGGTGGATCTG
GTTTTGGACGATCAGGAGGTAGCTTTGGTGGATCAAGCTCAGGTCGCTCAGGGAATTTTGGTGGTTCCGGGGACATGCGTGACTCCAATC
GCCAGGGAGGATTTGGTAATTTTGGTGGTTCAGATCGTAGTGGCGGTTTTGGTAATTCAAACCGGACTGGTGGCTTTGGAAACTTCGAGA
GTTCAAACCGCTCAAGTGGTTTTGGAGGATTTGGTTCAGGCCGCTCTAGTGGATTTGGTGATTCACGCTCTGACAATGAAAATCGTTCTG
GGAAGAAATTTTTCTAGTTCTTTCTGTAAGGTGAGGACACTGAATATGGCTTATTGGGAATGACCATGAAGAGACAAATGTGCGACTGAT
GTCCGATTTGTGAAGCATATGTGTTGATTATCAGGTTTTGTTTAGATTTGCAGTAGTTCCAGAATATGATTTTACAACTAAAATGCTATA
CGTAGAGAATTCCATAAGAAGTAACCATTTAATATCCACTTGGTTTCCACCTATATGTAATCTTTAGCTATCAAGAACACTGTCTTTTGC
TTGCCCGCTAAAAAAAAAAAAAAAAGTCATAATTTTTTATTATCTCAAGCTTAATGTTAAGCTGCGATACCCGAGCTATTGTTTGAAATT
CTGCAGTAAAGCAGTATGCAGTGACAGTTTAGATATTTTAATCTCAGTTTGCACAAAAAAAAAAAAAAACTATGCACCAGTACTCTTTTT
AGATGAATGTACTAATTGTGTATATAGGATGCTTGGATACAATAGAAATTTTGTGGGTGTTAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (19)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	6
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	3
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	4
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	3
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	4
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (37)

Alignment image suppressed for unigene with 37 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (6)

Annotations (manual: 1 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101393	DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	340
2	118423	Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	248
5	131107		8

Preceding Unigenes (1)

Unigene	Build
SGN-U214618	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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