Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U585551 in the current build, Tomato 200607 #2

Unigene SGN-U316477

Unigene Basic Information

Unigene ID:	SGN-U316477
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316477
mRNA sequence:	Length: 2065 bp

>SGN-U316477 Tomato 200607 #1 (24 members)
AACAATCAAGAGTCCACTAAACGTTTTGCCACACATCCATTTACTCCCACAGCTCTACAAAATGCTCTGACATCTCTTTTGCAACTTCCA
AAATGGCATCTTTTTCTATCAAATTTTTGGCACCTTCATTGCCAAATCCAACTAGATTTTCCAAGAGTAGTATTGTCAAGCTCAATGCAA
CTCCGCCGCAGACAGTGGCTGCGGCGGGGCCTCCAGAGGTTGCTGCTGAGAGACTAGAACCAAGAGTTGAGGAAAAAGATGGATATTGGA
TACTAAAAGAGCAGTTTAGGCAAGGAATTAATCCTCAAGAGAAGGTGAAGATTGAGAAGGAACCTATGAAGTTGTTCATGGAAAATGGTA
TTGAGGAGTTAGCTAAGATTCCAATTGAAGAGATAGATCAATCAAAGCTTACTAAGGATGACATTGATGTTAGGCTCAAGTGGCTTGGCC
TCTTCCATAGGAGAAAGAATCAATATGGGAGATTCATGATGAGGTTGAAACTTCCAAATGGAGTAACAACAAGTGCTCAGACTCGATATT
TGGCGAGTGTGATAAGGAAATATGGAGAGGAAGGATGTGCTGATATTACGACAAGGCAAAATTGGCAGATTCGTGGAGTAGTGCTGCCTG
ATGTGCCTGAGATTCTAAAGGGACTTGAAGAAGTTGGCTTGACTAGTTTGCAGAGTGGCATGGATAATGTCAGGAATCCAGTTGGAAATC
CTCTGGCTGGAATTGATCCTGAAGAAATAGTTGACACAAGACCTTACACTAATTTGCTCTCCCAATTTATCACTGGTAATTCACGAGGCA
ATCCGGCTGTTTCTAACTTGCCAAGGAAGTGGAATCCGTGTGTAGTAGGGTCTCATGATCTTTATGAGCACCCTCATATCAATGATCTTG
CATACATGCCTGCCATAAAAGATGGACGATTTGGATTCAACCTGCTTGTGGGAGGGTTCTTCAGTGCCAAAAGATGTGATGAGGCAATTC
CTCTTGATGCATGGGTTCCAGCCGATGATGTTGTTCCGGTTTGCAAGGCAATACTGGAAGCTTTTAGAGACCTTGGGTTCAGAGGGAACA
GGCAGAAGTGTAGAATGATGTGGTTGATCGATGAACTGGGTGTAGAAGGATTCAGGGCAGAGGTCGTAAAGAGAATGCCTCAGCAAGAGC
TAGAGAGAGCATCTCCGGAAGACTTGGTTCAGAAACAATGGGAAAGAAGAGATTATCTTGGTGTACATCCACAGAAACAGGAAGGCTATA
GCTTTATTGGTCTTCACATTCCAGTGGGTCGTGTCCAAGCAGACGACATGGATGATCTAGCTCGTTTGGCTGATGAGTACGGCTCAGGAG
AGCTACGGCTGACTGTGGAACAGAACATTATTATTCCCAACATTGAGAACTCAAAGATTGACGCACTGCTAAAAGAGCCTATTTTGAGCA
AATTTTCACCTGATCCACCTATTCTCATGAAAGGTTTAGTGGCTTGTACTGGTAACCAGTTTTGTGGACAAGCCATTATTGAAACGAAAG
CTCGTTCCCTGAAGATCACCGAAGAGGTTCAAAGGCAAGTATCTCTAACGAGGCCAGTAAGGATGCACTGGACAGGCTGCCCAAATACGT
GTGCACAAGTTCAAGTTGCAGACATTGGATTCATGGGATGCCTGACTAGAGATAAAGACAAGAAGACTGTGGAAGGCGCCGATGTTTTCT
TAGGAGGCAGAATAGGGAGTGACTCACATTTGGGTGAAGTATACAAGAAGGCAGTTCCTTGTGATGAATTAGTACCACTTATTGTGGACT
TACTTATTAAGAACTTTGGTGCAGTTCCACGAGAAAGAGAAGAAACAGAAGATTAATAAAATTTGGATTAGATCATAATGATGGAATGTG
CAATTATGTTTAGTGATTATGGAGGTATATAGCTAAGAGCTGGTTTGAATAATCAGAAATATGTTGTGTTCATATCATTTATTGTACGAT
AAATCAACACAAACATTCCTACTTACCTGAGAATTATTACAAACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
nii1	nii1 nitrite reductase	nitrite reductase

Genomic locations (0)

None

Library representation (11)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	2
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	5
Solanum lycopersicum	LB	Leaf Mature leaves	3316	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	4
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	3
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (24)

Alignment image suppressed for unigene with 24 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	102206	Nitrite and sulfite reductase iron-sulfur/siroheme-binding site - Biological Process: electron transport (GO:0006118) Nitrite and sulphite reductase 4Fe-4S region - Biological Process: electron transport (GO:0006118) Nitrite/sulfite reductase flavoprotein alpha-component domains 1 and 3 Nitrite/sulfite reductase hemoprotein beta-component ferrodoxin-like Ferredoxin-nitrite reductase - Molecular Function: oxidoreductase activity acting on other nitrogenous compounds as donors iron-sulfur protein as acceptor (GO:0016664) - Biological Process: nitrate assimilation (GO:0042128)	19
2	120151	Nitrite and sulfite reductase iron-sulfur/siroheme-binding site - Biological Process: electron transport (GO:0006118) Nitrite and sulphite reductase 4Fe-4S region - Biological Process: electron transport (GO:0006118) Ferredoxin-nitrite reductase - Molecular Function: oxidoreductase activity acting on other nitrogenous compounds as donors iron-sulfur protein as acceptor (GO:0016664) - Biological Process: nitrate assimilation (GO:0042128) Nitrite/sulfite reductase flavoprotein alpha-component domains 1 and 3 Nitrite/sulfite reductase hemoprotein beta-component ferrodoxin-like	10
5	130665	Nitrite and sulfite reductase iron-sulfur/siroheme-binding site - Biological Process: electron transport (GO:0006118) Nitrite and sulphite reductase 4Fe-4S region - Biological Process: electron transport (GO:0006118) Ferredoxin-nitrite reductase - Molecular Function: oxidoreductase activity acting on other nitrogenous compounds as donors iron-sulfur protein as acceptor (GO:0016664) - Biological Process: nitrate assimilation (GO:0042128) Nitrite/sulfite reductase flavoprotein alpha-component domains 1 and 3 Nitrite/sulfite reductase hemoprotein beta-component ferrodoxin-like	9

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (2)

Unigene	Build
SGN-U220342	Lycopersicon Combined #3
SGN-U221523	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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