Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U583651 in the current build, Tomato 200607 #2

Unigene SGN-U318374

Unigene Basic Information

Unigene ID:	SGN-U318374
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	318374
mRNA sequence:	Length: 2207 bp

>SGN-U318374 Tomato 200607 #1 (17 members)
TGCTTTTAAGGTTGCCAATTTCTGTGGTGCTGAAGATGATGCAACTTTTTGGAGTCGATGGATAAAGCCAGAAGCAACTGCACACGCTGA
AGACGCTTTGGCTCCTCGAGCTGCTCGAAATAAAAAGAGTTATGCAGAAGCTAGCCCGCTGGTGGTTACTAATAAAAGAAAGAAGGGTGG
TGATGCTCAGGAAAGGTTCCCAAAGCGTCGCAAGGGAGATTTTAGCTGCACACTTCCGGCAATTGATGGTGCTTCCGCTCAAGTGAGAGG
ATGGTCTTTTGGGAACTTGTCAAAAAGAGACGCCACACGTTTTTCTCGTGAGGTCAAGAAGTTTGGGAATGATAGCCAAATTGACTTAAT
ATCATCAGAGGTTGGTGGGGCAGTTGAAGCTGCACCAACTGAAGCTCAAGTTGAGCTTTTTGACTCATTGATTGATGGCTGTAGAGAAGC
AGTTAAAGGTGAAGTTGTTGATCCAAAGGGACCTCTTTTAGATTTTTTTGGTGTTCCTGTGAAGGCTGATGAACTATTGGCCCGTGTTGA
GGAACTTCAACTCCTAGCAAAGCGCATTTCTCGATATGCAGATCCTGTCTCACAGTTCCGTGCTTTGGCTTATCTAAAGCCTGCAACTTG
GTCTAAAGGTTGTGGCTGGAACCAGAAGGATGACGCCAGACTGCTTCTTGGAATTCATTATCACGGATTTGGCAACTGGGAAAAGATACG
ATTAGATGAAAAACTTGGCCTCATGAAGAAGATTGCTCCAGTGGAATTACAACATCATGAGACTTTCTTGCCAAGAGCTCCACAATTGAA
GGAGAGAGCTTCTCAACTTCTGCAAATGGAAGTTGCAGCTGTTGGTGGGAAGAACACTAGTTTAAAAGTGGGTCGTAAAACTTCCAACAA
GCAGAAGGAAAGCCTTCCCAGCACAACAGCATCTCTTGGAAAGGGTAAACAAAGTAAATTAAGCTCATCTGGAAATGCTAAAATGGGTAG
AGGCAGAGCTGCAAAAGGTCAAAAAAAGGTTGAGCCGTTGATAAAAGAGGAAGGTGAAATGTCAGATAATGAAGAAGTTTATGAGCAGTT
TAAAGAGGTGAAATGGATGGAATGGTGTGAAGATGTGATGGTGTATGAGGAAAAGACGCTTAAGCGTCTTCAAAGATTGCAGACTACTAG
TGCTGATCTCCCCAAGGACAAGGTGTTGGCCAAAATACGGAACTACTTGCAGCTTCTTGGTCGCAGGATTGATCAAATAGTTTTTGAATA
TGAGAACGAATCACATAAGCAAGAAAGGATGACAGTCCGTTTATGGAATTATGTCTCAACATTTTCAAATTTGTCTGGCGAGAAGCTTCG
TCAGATTTATTCTAAACTTAAGCAGGAGCAACATGTAGAAGGACGGGTAGGACCGTCGCAGTTTAATGGTTCTGCACCTGCGCATCCAAC
GCCAGGTTTTGTACCTCGAGGTTTTGATGCAGCCAAATTTGAAGCATGGAAACGAAGGAAAAGAGCTGAAGCTGATGTTCATTCGCAAGT
TCAGCCCCAACATCAAAGAGCTTTGACTAATGGTACACGCCTTCCTGAACCCAACTTGTCATCAGGGATTCTTGGCGCAGCTCCTTTAGA
TAGCAAACAGTCAGGTAGTGGTAGGCCTTACAGAACACATCAATCTGGCCTGCCTCAGAGACCAGGTTTCTCGTCCGGTCCCAGATAGCT
TCTTCTACTGGACATTAACTGCCATGGTGCCCCTGCAGGAAAGCCATTCAATTTTGTCTCAGTGGCTTTTGCTGCTTCGATCTATATTCT
TTACCTGGAATTGCGCTGGTCTATGGGAATACAAATTTTTGCTCATTCCTTGACCACATACCTGCTATTTTGAAGCCAACTGTAAACCAA
AGGACTGCATCATTTAGAAGCCAGAAAGAGTGAACTTGGAGGCGCCTTTCCTAGATCCAGGAGATGAAGATTTTGTTCTATTGGAATTTC
TAGGGCACACAGATTTCTTCCCCTTACAGATAAAATCCCAGTCTTTTTTTTTTGGCTGTTTTGAAGTATATAATGGATAGTGAAAGAGCA
TATTTCTTTAGGTTATATGTGACAGTTTGTCACAGTCTGTATGTATTATGCTTTTTGCGAAGTGTACATTATCAAATTTTGCTTATTCAA
TAACTCAACAACATTATTCTTTACTCCAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	4
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1

mRNA member sequences (17)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 1 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101437	DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) SNF2-related - Molecular Function: DNA binding (GO:0003677) - Molecular Function: ATP binding (GO:0005524) Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524)	162
2	124470	Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) Chromo - Cellular Component: chromatin (GO:0000785) - Molecular Function: chromatin binding (GO:0003682) - Cellular Component: nucleus (GO:0005634) - Biological Process: chromatin assembly or disassembly (GO:0006333) SNF2-related - Molecular Function: DNA binding (GO:0003677) - Molecular Function: ATP binding (GO:0005524) Homeodomain-like	3
5	139191		2

Preceding Unigenes (3)

Unigene	Build
SGN-U218700	Lycopersicon Combined #3
SGN-U228963	Lycopersicon Combined #3
SGN-U231839	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: