Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U572096 in the current build, Tomato 200607 #2

Unigene SGN-U320522

Unigene Basic Information

Unigene ID:	SGN-U320522
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	320522
mRNA sequence:	Length: 2019 bp

>SGN-U320522 Tomato 200607 #1 (11 members)
CCAAAATGAACTTCACAAAACCAGAAGCTAGACGCTGGGGTCAAGTCAAAATTTCAAAGTTAAAGTTCATGGGACTTGATCGAAGAGGTG
GGACATTAGGTTCACATAAGAAATACAAACGAAATACTACAAAGAAGGATAGTATTTATGATATAAGATCATTCAAAAAGGGTTCTGTAG
CGGCTAATGTGTACAAGGAATTGATCAGAAGGTGCATGGCGAACATTGATGCCACACTTAATAAAGAACAACCACCAATAATTGATCAGT
GGAAAGAGTTTCAGTCAACAAAATCTAGCCAGAGAGAGTCGGGTGATCATCTCGCAATGAATAGGGACGAAGAGGTTTCAGAAATTGATA
TGTTATGGAAGGAGATGGAACTAGCCTTGGCATCATGTTATCTTCTAGATGACAGTGAGGATTCCCATGCTCAATATGCAAGTAATGTCA
GGATAGGAGCTGAAATACGTGGAGAAGTTTGTCGACATGATTATCGACTGAATGAAGAAATCGGAATTATTTGCCGGCTATGTGGATTCG
TTAGCACCGAAATAAAGGATGTTCCACCACCTTTTATGCCTTCGTCAAACCACAATTCCAGCAAGGAGCAAAGAACTGAAGAAGCTACAG
ATCACAAGCAGGATGATGATGGCCTTGATACTTTGTCCATTCCTGTTTCTTCCAGAGCACCCTCATCATCAGGAGGAGGGGAAGGAAATG
TCTGGGCATTGATACCTGATCTAGGAAATAAATTACGGGTACACCAAAAGAGAGCCTTTGAGTTTCTGTGGAAAAATATTGCTGGATCCA
TAGTACCTGCAGAAATGCAACCAGAGAGCAAAGAGAGAGGTGGCTGTGTTATTTCTCATACTCCAGGAGCTGGGAAAACCTTACTTATTA
TTTCCTTCCTTGTAAGCTACCTGAAGTTATTTCCTGGGTCACGACCGTTGGTCCTTGCTCCCAAGACAACACTCTACACCTGGTACAAAG
AAGTACTGAAGTGGAAGATTCCTGTGCCAGTCTACCAAATTCATGGTGGTCAAACCTTTAAGGGAGAGGTTCTAAGGGAAAAGGTGAAAT
TATGTCCTGGTCTTCCTCGCAACCAAGATGTCATGCATGTCTTGGACTGCCTTGAGAAAATGCAGATGTGGCTTTCGCAACCAAGTGTTC
TCCTCATGGGTTACACCTCTTTCTTAACACTGACACGGGAAGATTCACCTTATGCGCATAGGAAATATATGGCTCAGGTGTTGCGGCAGT
GTCCAGGGCTACTAATACTTGATGAAGGGCACAACCCAAGAAGTACAAAATCCCGGTTAAGAAAGGGTCTAATGAAGGTCAATACACGGC
TTAGGATTTTACTTTCTGGTACATTATTTCAGAATAATTTTGGAGAGTATTTCAATACACTTACCTTAGCAAGGCCAACTTTTGTTGATG
AGGTCTTGAAGGAGCTTGATCCCAAGTACAAGAACAAAAACAAAGGTGCATCGCGCTTTTCATTGGAAAATCGAGCAAGAAAGATGTTTA
TTGATAAAATTTCAACTGTCATTGATTCAGACATCCCCAAGAAAAGGAAAGAAGGCCTAAACATATTGAAGAAACTAACAGGTGGATTCA
TAGATGTGCATGATGGTGGAACATCTGATAACCTTCCTGGTTTACAATGTTACACCTTGATGATGAAATCAACTACTCTTCAACAAGAGA
TCTTGGTGAAGCTTCAAAATCAAAGGCCCATCTATAAAGGATTTCCTCTGGAGTTAGAGCTGTTGATTACCCTTGGTGCAATCCATCCTT
GGTTGATCAGAACGACAGCATGTTCTAGCCAGTACTTCAAGGAAGAGGAGCTGGAGGCTCTCCAGAAATTCAAGTTTGATCTGAAGCTGG
GTTCGAAAGTCAAATTTGTGATGAGCCTAATTCCTCGTTGTCTCCTCAGGAGAGAAAAGGTTTTGATATTTTGCCACAATATTGCTCCAA
TTAATCTTTTTCTGGAGATATTTGAGAGGTTCTATGGGT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (7)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	3
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1

mRNA member sequences (11)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101437	DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) SNF2-related - Molecular Function: DNA binding (GO:0003677) - Molecular Function: ATP binding (GO:0005524) Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524)	162
2	119280	Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) SNF2-related - Molecular Function: DNA binding (GO:0003677) - Molecular Function: ATP binding (GO:0005524)	17
5	130555	Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) SNF2-related - Molecular Function: DNA binding (GO:0003677) - Molecular Function: ATP binding (GO:0005524)	9

Preceding Unigenes (1)

Unigene	Build
SGN-U218779	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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